| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,723,779 – 3,723,863 |
| Length | 84 |
| Max. P | 0.707078 |
| Location | 3,723,779 – 3,723,863 |
|---|---|
| Length | 84 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 93.25 |
| Shannon entropy | 0.11006 |
| G+C content | 0.42398 |
| Mean single sequence MFE | -9.97 |
| Consensus MFE | -10.23 |
| Energy contribution | -10.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.65 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3723779 84 + 23011544 UCCUUAAUGGAGUUACAUCACACUGAUUCCCGCAAUCCAAGCAAAAUGCAAGCCAAAGCUAAAGCCACCAACAAAGUACAAAAU ........(((((((........))))))).((.......((.....)).(((....)))...))................... ( -10.10, z-score = -0.76, R) >droSim1.chr2L 3680988 84 + 22036055 UCCUUAAAGGAGUUACACCACACUGAUUCCCGCAAUCCAAGCAAAAUGCAAGCCAAAGCUAAAGCCACCAACAAAGUACAGAAU ........(((((((........))))))).((.......((.....)).(((....)))...))................... ( -10.30, z-score = -0.95, R) >droYak2.chr2L 3720003 84 + 22324452 UCCUUAAAGGAGUUACAACACACUGAUUCCCGCAAUCCAAGCAAAAUGCAAGCCAAAGCUAAAGCCACCAACAAAGUAUAAUAC ........(((((((........))))))).((.......((.....)).(((....)))...))................... ( -10.30, z-score = -1.15, R) >droEre2.scaffold_4929 3767678 83 + 26641161 UCCUUAAAGGAGUUACACCACACUGAUUCCCGCAAUCCAAGCAAAAUGCAAGCCAA-GCUAAAGCCACCAACCAAGUAUACUGC ........(((((((........))))))).((.......((.....)).(((...-)))...))................... ( -9.20, z-score = 0.27, R) >consensus UCCUUAAAGGAGUUACACCACACUGAUUCCCGCAAUCCAAGCAAAAUGCAAGCCAAAGCUAAAGCCACCAACAAAGUACAAAAC ........(((((((........))))))).((.......((.....)).(((....)))...))................... (-10.23 = -10.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:30 2011