| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,124,597 – 19,124,717 |
| Length | 120 |
| Max. P | 0.714172 |
| Location | 19,124,597 – 19,124,717 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.39067 |
| G+C content | 0.40335 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -17.58 |
| Energy contribution | -16.98 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19124597 120 + 21146708 AACAUUCUGUCUCGUUUUAUGAGCAGACAAGCAAUACUUUUUCGCGCCUUUUAUGAAUUCUGCGGAAAAAGUAUAUAGAGUAUAUAUACCAGAUAUACAGUUGUAUGUAGUUCCCGGAAC ......(((.(((((...))))))))(((.(((((((((((((.(((..............))))))))))))).....((((((.......))))))...))).)))............ ( -25.84, z-score = -1.32, R) >droEre2.scaffold_4845 20493413 94 + 22589142 AAGCUUCUGUCUCAACUUAUGAGCAGACAAGCACUACAUUUUCGCGCCUUUUAUGAAUUCCGCGGAAAAAGUGGAU--------------------------GUGCAUAAUUCUCGGAAC ..(((((((.((((.....))))))))..))).......(((((.(....(((((...(((((.......))))).--------------------------...)))))..).))))). ( -24.10, z-score = -1.61, R) >droYak2.chr2R 19089591 102 + 21139217 CAUCUUCUGUCUCACUCUAUGAGCAGGCAGGCAAUACUUUUUCGCGCCUUUUAUGAAUUCCGCGGAAAAUGUAUAU------------------GCGCAUAUGCAUAAAAUUCGAGGAAC ..((((((((((..(((...))).))))).((((((((((((((((..............))))))))).)))).)------------------))((....)).........))))).. ( -25.34, z-score = -1.30, R) >droSec1.super_9 2418222 106 + 3197100 CACAUUCUGUCUCGUUUUAUGAGCAGACAAGCAAUACUUUUUCGCGCCUUUUAUGAAUUCCGCGGAAAAUGUAUGU--------------GUAUCUACAGUUGUAUGCAAUUCCCGGAAC (((..((((.(((((...)))))))))......(((((((((((((..............))))))))).))))))--------------)..(((..(((((....)))))...))).. ( -23.44, z-score = -1.05, R) >droSim1.chr2R 17706634 106 + 19596830 CACAUUCUGUCUCGUUUUAUGAGCAGACAAGCAAUACUUUUUCGCGCCUUUUAUGAAUUCCGCGGAAAAUGUUUGU--------------GUAUCUACAGUUGUAUGCAAUUCCCGGAAC .(((.((((.(((((...)))))))))((((((....(((((((((..............))))))))))))))))--------------)).(((..(((((....)))))...))).. ( -23.24, z-score = -1.00, R) >consensus CACAUUCUGUCUCGUUUUAUGAGCAGACAAGCAAUACUUUUUCGCGCCUUUUAUGAAUUCCGCGGAAAAUGUAUAU________________AUCUACAGUUGUAUGCAAUUCCCGGAAC .....((((.((((.....))))))))......(((((((((((((..............))))))))).)))).............................................. (-17.58 = -16.98 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:05 2011