| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,112,580 – 19,112,677 |
| Length | 97 |
| Max. P | 0.563283 |
| Location | 19,112,580 – 19,112,677 |
|---|---|
| Length | 97 |
| Sequences | 9 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.62 |
| Shannon entropy | 0.46481 |
| G+C content | 0.41126 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -12.50 |
| Energy contribution | -12.87 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19112580 97 - 21146708 ----CGCGCAGUUG-GGCUGUGGAGCGAAAAAGCAACGG-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUCAGUAAAAAUGUACACAUCCCUG--------- ----.........(-((.((((..((......)).....-.((((((((.((((....((((((((...))))))))....)))))))))))))))).)))..--------- ( -25.00, z-score = -1.33, R) >droAna3.scaffold_13266 8207871 87 + 19884421 --------------GGGAGGAGGGGCGGUGGGGCAACGC-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUUCCG---------- --------------.((((...(((((.........)))-)((((((((.((((....((((((((...))))))))....)))))))))))))...)))).---------- ( -21.20, z-score = -1.74, R) >droEre2.scaffold_4845 20480206 96 - 22589142 ----CACGGAGCUG-AGCGGGGGAGCGAAAAGGCAACGC-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUCCCG---------- ----..........-..((((((((((.........)))-))(((((((.((((....((((((((...))))))))....))))))))))).....)))))---------- ( -23.00, z-score = -1.16, R) >droYak2.chr2R 19077215 97 - 21139217 ----CACGGAGUUG-GGCUGGGGAGCGAAACAGCAACGG-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUCCCUG--------- ----..........-....(((((((......))...(.-.((((((((.((((....((((((((...))))))))....))))))))))))..).))))).--------- ( -23.20, z-score = -0.98, R) >droSec1.super_9 2406320 97 - 3197100 ----CACGCAGUUG-GGCUGGGGAGCGAAAAAGCAACGG-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUCUUCG--------- ----...((.....-.)).(((((((......))...(.-.((((((((.((((....((((((((...))))))))....))))))))))))..).))))).--------- ( -20.80, z-score = -0.82, R) >droSim1.chr2R 17694784 97 - 19596830 ----CACGCAGUUG-GGCUGGGGAGCGAAAAAGCAACGG-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUCUCCG--------- ----...((.....-.)).(((((((......))...(.-.((((((((.((((....((((((((...))))))))....))))))))))))..).))))).--------- ( -23.60, z-score = -1.52, R) >droWil1.scaffold_180699 2301365 97 + 2593675 -------GUGAU---GGGGCUAGGGACAGGGGGCGGAGGAUUGCAUUUUAUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUAAACGC-ACAUACAAC---- -------(((.(---(..(((..........)))......(((((((((.((((....((((((((...))))))))....))))))))))))).)))-)).......---- ( -18.50, z-score = -1.94, R) >droPer1.super_2 5665062 102 + 9036312 CCUUGGUGUGGGUGUGGGUGCAGAGAGAAAAGGCAACGG-UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACACAUUCA--------- ........((((((((.(((((..........(((((((-((.....((((((....))))))....))))))))).............))))).))))))))--------- ( -26.50, z-score = -1.82, R) >droGri2.scaffold_15112 2120667 103 + 5172618 ----CACGCGAC---GGGGGCGGGGUCAGGUGGCAAUG--UUGCAUUCUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAUAUGUAAACAUGGCGCACGCUUACG ----..(((...---....)))..((.(((((((.(((--((((((....((((....((((((((...))))))))....))))...)))).))))).)).))).)).)). ( -26.00, z-score = -0.71, R) >consensus ____CACGCAGUUG_GGCUGGGGAGCGAAAAGGCAACGG_UUGCAUUUUGUAUUCAAGUACAACGAAAAUUGUUGUAAAUUAGUAAAAAUGUACACAUCCCCG_________ ........................((......)).......((((((((.((((....((((((((...))))))))....))))))))))))................... (-12.50 = -12.87 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:03 2011