| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,112,274 – 19,112,368 |
| Length | 94 |
| Max. P | 0.938659 |
| Location | 19,112,274 – 19,112,368 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 58.85 |
| Shannon entropy | 0.80605 |
| G+C content | 0.60940 |
| Mean single sequence MFE | -33.44 |
| Consensus MFE | -5.02 |
| Energy contribution | -6.64 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19112274 94 + 21146708 UCCAGCCCCCAAAAA-GGGAGCGAGUGAAAGAGACGGCGUUACCAAAGUGCCCUUUCGCCGUGCGCUCUGUCCCGCUCGCUCCUGCUCGGCAAAU--- ....(((........-(((((((((((..((((((((((.....((((....))))))))))...))))....)))))))))))....)))....--- ( -37.20, z-score = -3.14, R) >droSim1.chr2R 17694489 94 + 19596830 UCCAGCCCUCAAAAA-GGGAGCGAGUGAAAGAGACGGCGCUACCAGAGUGCCCUUUCGCCGUGCGCUCUGUCCCGCUCGCUCCCGCUCGGCAAAU--- ....(((........-(((((((((((..((((..((((((.....))))))....(((...)))))))....)))))))))))....)))....--- ( -40.40, z-score = -3.11, R) >droSec1.super_9 2406030 94 + 3197100 UCCAACCCUCAAAAA-GGGACCGAGUGAAAGAGACAGCGCUACCAGAGUGCCCUUUCGCCGUGCGCUCUGUCCCGCUCGCUCCCGCUCGGCAAAU--- .....((((.....)-))).(((((((...(((..((((....((((((((.(.......).))))))))...))))..))).))))))).....--- ( -36.20, z-score = -3.61, R) >droYak2.chr2R 19076898 82 + 21139217 UCCAGCCCCCAAAAAGGGGAGCGAGUGAAAGAGACGGCGCCACCAGAGUGCCCCCUC-------------UCUCUCUCGCUCCCGCUCGGCAAAU--- ....(((..(.....)(((((((((.((.((((..((((((....).)))))..)))-------------).)).)))))))))....)))....--- ( -37.40, z-score = -4.20, R) >droEre2.scaffold_4845 20479939 76 + 22589142 UGCAGCCCCCAAAAAAGGGAGCGAGUGAGGGAGACGGCGCUACCAGAGUGCC----C-------------UUUCGCUCGCUCCCGCUCGCCAA----- .(((((..........(((((((((((((((....((((((.....))))))----)-------------))))))))))))))))).))...----- ( -38.10, z-score = -3.81, R) >droAna3.scaffold_13266 8207601 75 - 19884421 -------------ACCAGGAGAGAUCGAGCGAG-UAGCACUACCCGAA-ACCCUGUGGCAGGGCC-----UCCCUUCCCAGCUCCCUGGGCAGCU--- -------------.(((((.(((......((.(-((....))).))..-...(((.((.((((..-----.)))).)))))))))))))......--- ( -25.40, z-score = -0.13, R) >droMoj3.scaffold_6496 4783071 77 - 26866924 ----------------GCGAGAGCAUGAAAGAAAGAGUG-----AAAGAGUCCAUAGGAGUUGGAGGCGAGGCGAGUCGAGUCGACUCGGUAUUUAUG ----------------((....))............(((-----((.(..((((.......))))..)....(((((((...)))))))...))))). ( -19.40, z-score = -1.64, R) >consensus UCCAGCCCCCAAAAA_GGGAGCGAGUGAAAGAGACGGCGCUACCAGAGUGCCCUUUCGCCGUGCG__C__UCCCGCUCGCUCCCGCUCGGCAAAU___ ................((((.((((((..............................................)))))).)))).............. ( -5.02 = -6.64 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:02 2011