| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,077,039 – 19,077,105 |
| Length | 66 |
| Max. P | 0.844323 |
| Location | 19,077,039 – 19,077,105 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 70.77 |
| Shannon entropy | 0.49073 |
| G+C content | 0.41705 |
| Mean single sequence MFE | -16.86 |
| Consensus MFE | -8.04 |
| Energy contribution | -9.19 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19077039 66 + 21146708 -------AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU---GGU-UUGGCUGUGGUUCUGGUUCU -------..((((((((....)))))))).......(((..((..((((.---...-..))))...))...)))... ( -18.00, z-score = -2.44, R) >droPer1.super_2 5621907 71 - 9036312 AGUGGAGCGUAACAGGCAGAAGUACUUGAAAAUACUGUUAGAUACGGACUCCGGACUCUGGCUCUGCCUUU------ .............(((((((((((........))))((((((..(((...)))...)))))))))))))..------ ( -19.50, z-score = -0.97, R) >dp4.chr3 16557348 71 - 19779522 AGUGGAGCGUAACAGGCAGAAGUACUUGAAAAUACUGUUAGAUACGGACUCCGGACUCUGGCUCUGCCUUU------ .............(((((((((((........))))((((((..(((...)))...)))))))))))))..------ ( -19.50, z-score = -0.97, R) >droEre2.scaffold_4845 20445185 61 + 22589142 -------AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU---GCUUUUGGUGCUGGUUCU------ -------..((((((((....)))))))).......((.....((((...---.))))....)).......------ ( -15.90, z-score = -1.78, R) >droYak2.chr2R 19041084 55 + 21139217 -------AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU---GGUACUGGUUCU------------ -------..((((((((....))))))))......((((...........---))))........------------ ( -13.40, z-score = -1.89, R) >droSec1.super_9 2371445 66 + 3197100 -------AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU---GGU-UUGGUUCUGGUUCUGGUUCU -------..((((((((....))))))))...............((..(.---.(.-......)..)..))...... ( -16.20, z-score = -2.24, R) >droSim1.chr2R 17659491 60 + 19596830 -------AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU---GGU-UUGGUUCUGGUUCU------ -------..((((((((....))))))))...............((..(.---.(.-......)..)..))------ ( -15.50, z-score = -2.56, R) >consensus _______AGUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU___GGU_UUGGUUCUGGUUCU______ .........((((((((....))))))))................................................ ( -8.04 = -9.19 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:01 2011