| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,074,713 – 19,074,834 |
| Length | 121 |
| Max. P | 0.577187 |
| Location | 19,074,713 – 19,074,834 |
|---|---|
| Length | 121 |
| Sequences | 6 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 77.57 |
| Shannon entropy | 0.43836 |
| G+C content | 0.39866 |
| Mean single sequence MFE | -28.01 |
| Consensus MFE | -13.86 |
| Energy contribution | -15.37 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19074713 121 + 21146708 UGUUCGAAA-UAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCAUGGG-AGGUGGAACAAGAAGUUUCUAUAGGGUAUGGAAAUAUAUAGCA (((((....-.....(((((......)))))...((((((..(((((((.((((((.....)))))).)))).)).).)-))))))))))....(((((((((...)))))))))........ ( -32.10, z-score = -2.97, R) >droSim1.chr2R 17657156 121 + 19596830 UGUUCGAAA-UAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGAAGGUGCACAGG-GUGUGGAACGAAAAGUUUCUAUAUGGCAUGGAAAUAUAUAACA .((((....-.....(((((......)))))..((((((((..((((((.((((((.....)))))).)))).))))))-)))).)))).....((((((((.....))))))))........ ( -31.10, z-score = -2.30, R) >droSec1.super_9 2369098 122 + 3197100 UGUUCGAAA-UAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGGUGGGUGGAACGAAAAGUUUGUAUAUGGCAUGGAAAUAUAUAACA .((((....-.....(((((......)))))...(((((...(((((((.((((((.....)))))).))))...)))..))))))))).....(((.((((((.........))))))))). ( -29.90, z-score = -1.76, R) >droYak2.chr2R 19038590 118 + 21139217 UGUUCAAAAAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGCUGCACAGG-CGGUGGAAUGAAAAGUUUUUAUA----AGUUAAAUAAAUACUA (((((.......((((((((..((((..........)))).)))))))).......)))))..(((...(((((....)-))))...)))...(((.(((((.----......))))).))). ( -25.64, z-score = -1.13, R) >droEre2.scaffold_4845 20442785 118 + 22589142 UGUUCAAAAAUAAAGUCGGUGAAAAAGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAGGGAGCUGCACAGG-GGGUGGCACGAAAAGUUUCUAUA----ACAUAAAUAAAUGGUA ....((((.......(((((......)))))......))))(((.((((((.((((.(((.(.....).))).)))).(-..((((.((.....))..)))).----.)....))))))))). ( -22.62, z-score = 0.20, R) >droAna3.scaffold_13266 8172349 105 - 19884421 ------AAAAUAAAGUCAAUGGAAGGCCGAGAAACACUUUGACUGAUUUGUAUGUGGAGCAUAUGUGG----CCAGGAG-AGGUGGCUAAGAAGGUUUAGUUGAAGUCUAAAGACA------- ------.........(((((...(((((.((...((((((..(((..(..((((((...))))))..)----.)))..)-))))).)).....))))).))))).(((....))).------- ( -26.70, z-score = -2.22, R) >consensus UGUUCGAAA_UAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGG_GGGUGGAACGAAAAGUUUCUAUA_GG_AUGGAAAUAUAUAACA .((((..........(((((......)))))...(((((...(((..((.((((((.....)))))).)).....)))..))))))))).................................. (-13.86 = -15.37 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:45:00 2011