| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,712,327 – 3,712,438 |
| Length | 111 |
| Max. P | 0.950006 |
| Location | 3,712,327 – 3,712,438 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.51 |
| Shannon entropy | 0.48562 |
| G+C content | 0.48859 |
| Mean single sequence MFE | -33.34 |
| Consensus MFE | -17.61 |
| Energy contribution | -20.37 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3712327 111 - 23011544 ---------ACCAGCGGUUGGAUAUUGCCGAGCCAAUCGCAGCAAAGGAACACGUGAGAACGCAGAUACAUCCGUGUCUGCACAAGAUCAAAGGACUUCUAGAUCCGGAAACCUGCAUCA ---------....((((((((...........)))))))).(((..(((.(.(....)...((((((((....))))))))....................).)))(....).))).... ( -33.20, z-score = -1.88, R) >droAna3.scaffold_12916 5775886 120 - 16180835 ACUCAAAUCAAAAACAUACUGUGAUUGUCGAGAAAGCGAGAGAAAAUGAUACUGUGAUUACAGUAAUACAUCCUUGUCUGCACAGGAUCAAAGGUCCUGUUGAUCCCGAAAUGGCUACCA ....................((.(((.(((.((..((.(((.((.(((.((((((....))))))...)))..)).)))))(((((((.....)))))))...)).)))))).))..... ( -26.10, z-score = -0.70, R) >droEre2.scaffold_4929 3757102 111 - 26641161 ---------GCCAACAACUGGAUAUUGCAGAUCCAAACACAGGCAAUAACAACCUGAUAACGCAGAUACAUCCGUGUCUGCACAGGGUCACAGGUAAUCGAGAUCCGGAAACCUGCCUCA ---------.(((.....)))........(((((.....((((.........)))).....((((((((....))))))))...))))).(((((..(((.....)))..)))))..... ( -33.30, z-score = -2.95, R) >droYak2.chr2L 3709283 111 - 22324452 ---------ACCCGCGAUUGGACAUUGAAGAGACAAUCGCAGGAAAGGAAAAACUGAGAACGCAGAUACAUCCGUGUUUGCACAGGAUUAAAGGACUUUUGGAUCCGGACACCUGCCCCA ---------.((.(((((((.............))))))).))...((.............((((((((....)))))))).((((......((((.....).))).....))))..)). ( -31.02, z-score = -2.18, R) >droSec1.super_5 1807897 111 - 5866729 ---------ACCAGCGGUUGGAUAUUGCCGAGCCAAUCGCAGCAAAGGCACACGUGAGAACGCAGAUACAUCCGUGUCUGCACAGGAUCGCAGGUCUUCUAGAUCCGGAAACUUGCAUCA ---------....((((((((...........)))))))).((....))...(....)...((((((((....))))))))....(((.((((((.((((......))))))))))))). ( -37.70, z-score = -1.93, R) >droSim1.chr2L 3669556 111 - 22036055 ---------ACCAGCGGUUGGAUAUUGCCGAGCCAAUCGCAGCAAAGCAACGCGUGAGAACGCAGAUACAUCCGUGUCUGCACAGGAUCGUAGGUCUUCUAGAUCCGGAAACUUGCAUCA ---------....((((((((...........)))))))).((........))(..((...((((((((....))))))))...(((((.(((.....)))))))).....))..).... ( -38.70, z-score = -2.30, R) >consensus _________ACCAGCGGUUGGAUAUUGCCGAGCCAAUCGCAGCAAAGGAAAACGUGAGAACGCAGAUACAUCCGUGUCUGCACAGGAUCAAAGGUCUUCUAGAUCCGGAAACCUGCAUCA ..........((.((((((((...........)))))))).....................((((((((....))))))))...(((((............)))))))............ (-17.61 = -20.37 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:29 2011