| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,065,047 – 19,065,122 |
| Length | 75 |
| Max. P | 0.929934 |
| Location | 19,065,047 – 19,065,122 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 91.33 |
| Shannon entropy | 0.14150 |
| G+C content | 0.45928 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -17.84 |
| Energy contribution | -18.90 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19065047 75 + 21146708 CGGUUUCAUAGGCAUUUCCGGAUUUCCGAGCGCCAUAAGUAACAUUUGCCAUUAGGCAAUCGAAAUCGGAAUCGG (((((((...(((.....(((....)))...)))...........(((((....)))))..)))))))....... ( -21.60, z-score = -2.19, R) >droSim1.chr2R 17647554 75 + 19596830 CGGUUUCAUAGGCAUUUCCGGAUUUCCGAGCGCCAUAAGUAACAUUUGCCAUUAGGCAAUCCAAAUCGGAAUCGA (((((((...(((.....(((....)))...)))...........(((((....)))))........))))))). ( -20.90, z-score = -2.16, R) >droSec1.super_9 2359537 75 + 3197100 CGGUUUCAUAGGCAUUUCCGGAUUUCCGAGCGCCAUAAGUAACAUUUGCCAUUAGGCAAUCCAAAUCGGAAUCGA (((((((...(((.....(((....)))...)))...........(((((....)))))........))))))). ( -20.90, z-score = -2.16, R) >droYak2.chr2R 19028720 69 + 21139217 CACUUUCAGAGGCAUUUCCGGAUUUCCGAGCGCCAUAAGUAACAUUUGCCAUUAGGCAAUCGCAAUCGA------ ........(((((.....(((....)))...)))...........(((((....)))))))........------ ( -13.70, z-score = -0.67, R) >consensus CGGUUUCAUAGGCAUUUCCGGAUUUCCGAGCGCCAUAAGUAACAUUUGCCAUUAGGCAAUCCAAAUCGGAAUCGA (((((((...(((.....(((....)))...)))...........(((((....)))))........))))))). (-17.84 = -18.90 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:59 2011