| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,006,374 – 19,006,467 |
| Length | 93 |
| Max. P | 0.951117 |
| Location | 19,006,374 – 19,006,467 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.74 |
| Shannon entropy | 0.33230 |
| G+C content | 0.45805 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -19.61 |
| Energy contribution | -19.90 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19006374 93 - 21146708 -GACGGCCUUGAGUGUGGGAUACACACAAA--------------AAGAAGGCAGACUUU--GGGCGG----GGAAUUUGAGUGGAUUUUGAGUUUCUUGUUUGCCGUUGAAUAA -((((((.....(((((.....)))))...--------------..((((.....))))--((((((----((((((..((.....))..))))))))))))))))))...... ( -30.10, z-score = -3.09, R) >droAna3.scaffold_13266 8103962 108 + 19884421 -GAUGGCCUUGAGUGUCAGAUAUACGAAAAAUGAAAAUUAUCCCAAGGAGGGGAACGUA--GGAAGG---CAGUACUUGAGUUCUCUGCGAGCUCCUUGCUUGCCGCUGAAUAA -..............((((...((((...(((....))).((((......)))).))))--....((---(((((...((((((.....))))))..))).)))).)))).... ( -28.00, z-score = -0.32, R) >droEre2.scaffold_4845 20373611 93 - 22589142 -GGCGGCCUUGAGUGUGGGAUACACACAAA--------------AAGAAGGCAGACUUU--GGGCGG----AGAAUUUGAGUGGAUUUUGAGUUUCUUGUUUGCCGCUGAAUAA -..(((((((..(((((.....)))))...--------------)))..(((((((...--((((..----(((((((....)))))))..))))...)))))))))))..... ( -29.30, z-score = -2.42, R) >droYak2.chr2R 18969476 103 - 21139217 GACCGGCCUUGAGUGUGGGAUACACACAAAA-----------AUAAGAAGGCAGACUUUUGGGCCGGGGUUGGAAUUUGAGUGGAUUUUGAGUUUCUUGUUUGCCGUUGAAUAA ..(((((((...(((((.....)))))....-----------...(((((.....))))))))))))(((.((((((..((.....))..))))))......)))......... ( -32.50, z-score = -2.43, R) >droSec1.super_9 2301054 93 - 3197100 -GACGGCCUUGAGUGUGGGAUACACACAAA--------------AAGAAGGCAGACUUU--GGGCGG----GGAAUUCGAGUGGAUUUUGACUUUCUUGUUUGCCGUUGAAUAA -((((((.....(((((.....)))))...--------------..((((.....))))--((((((----((((.(((((.....))))).))))))))))))))))...... ( -28.60, z-score = -2.29, R) >droSim1.chr2R 17586805 93 - 19596830 -GACGGCCUUGAGUGUGGGAUACACACAAA--------------AAGAAGGCAGACUUU--GGGCGG----GGAAUUCGAGUGGAUUUUGAGUUUCUUGUUUGCCGUUGAAUAA -((((((.....(((((.....)))))...--------------..((((.....))))--((((((----((((((((((.....))))))))))))))))))))))...... ( -32.30, z-score = -3.53, R) >consensus _GACGGCCUUGAGUGUGGGAUACACACAAA______________AAGAAGGCAGACUUU__GGGCGG____GGAAUUUGAGUGGAUUUUGAGUUUCUUGUUUGCCGUUGAAUAA ...((((.....(((((.....)))))......................(((((((...............((((((((((.....))))))))))..)))))))))))..... (-19.61 = -19.90 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:54 2011