| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,000,620 – 19,000,723 |
| Length | 103 |
| Max. P | 0.524888 |
| Location | 19,000,620 – 19,000,723 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Shannon entropy | 0.49164 |
| G+C content | 0.41676 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -4.81 |
| Energy contribution | -5.02 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19000620 103 + 21146708 ------CGCCAGCUAUUGCCAUUUCCCUUUC--CCCGUUAGC-CCGCUCACACUCUUACCUGCCUUAUUUCUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------.....((((((((............--...((.((.-...)).)).............((((((.((...--..)).))))))................)))))))). ( -16.10, z-score = -2.39, R) >droSim1.chr2R 17581088 103 + 19596830 ------UGCCAGCUAUUGCCCUUUCCCUUCC--CCCGUUAUC-CCGCUCACACUCUUACCUGCCUUAUUUCUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------.....((((((((............--.........-..((..............)).((((((.((...--..)).))))))................)))))))). ( -14.34, z-score = -2.68, R) >droSec1.super_9 2295404 103 + 3197100 ------CGCCAGCUAUUGCUAUUUCCCUUCC--CCCGUUAUC-CCGCUUACACUCUUACCUGCCUUAUUUCUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------.....((((((((............--.........-..((..............)).((((((.((...--..)).))))))................)))))))). ( -14.74, z-score = -2.67, R) >droYak2.chr2R 18963626 97 + 21139217 ------CGCCAGCUAUUGCCAUUCCCCU--------GUUAGC-CCGCUCACACUUUUACCUGCCUUAUUCCUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------.....((((((((........(--------(((((.-..((..............)).(((((..((...--..))..))))).)))))).........)))))))). ( -15.57, z-score = -1.95, R) >droEre2.scaffold_4845 20367771 97 + 22589142 ------CGCCAGCUAUUGCCAUUCCCCU--------GUUAGC-CCGCUCACACUUUUACCUGCCUUAUUUCUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------.....((((((((........(--------(((((.-..((..............)).((((((.((...--..)).)))))).)))))).........)))))))). ( -16.77, z-score = -2.30, R) >droAna3.scaffold_13266 8098149 96 - 19884421 CUCCAGCUAUUGCUAUUUCUCUUUGCUCCG----------------CUUACACUGUUACCUGCCUUAUUUUUCUCU-UU-GACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG .....((((((((...........((...)----------------)...((.(((((......((((((.((...-..-)).))))))..))))))).......)))))))). ( -14.80, z-score = -1.88, R) >dp4.chr3 16473963 97 - 19779522 ------------UUUUGACUAUUGCUAUUUC--UCCUUUGCU-CUGCUUACACUUUUACCUGCCUUAUUUUUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------------....(.(((((((......--.........-..((..............)).((((((.((...--..)).))))))................)))))))). ( -10.44, z-score = -1.35, R) >droPer1.super_2 5537742 97 - 9036312 ------------UUUUGGCUAUUGCUAUUUC--UCCUUUGCU-CUGCUUACACUUUUACCUGCCUUAUUUUUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------------.....((((((((......--.........-..((..............)).((((((.((...--..)).))))))................)))))))). ( -14.24, z-score = -2.00, R) >droWil1.scaffold_180699 2145588 113 - 2593675 UUCCAUCUAUUGCUAUUUUCUCUCUCUCCGUCUUCUUUUACUUUUGCUUACACUUUUACCAGCCUUAUUUUUCUCU-UUUGACAAAUAAAUUGACAUGCCACAUAGCGAUAGCG ......((((((((((.............................(((............))).((((((.((...-...)).)))))).............)))))))))).. ( -13.40, z-score = -2.30, R) >droVir3.scaffold_12875 17632856 96 - 20611582 ------------UUUUAGCUAUUGCCAUUGC--UUUUCUAC--CUGCUUACACUUUUACCUGCCUUAUUUUUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ------------.....((((((((.((.((--...((...--..((..............)).((((((.((...--..)).))))))...))...))...)).)))))))). ( -14.84, z-score = -2.73, R) >droMoj3.scaffold_6496 22215496 108 + 26866924 UUUCAGCUAUUGCCAUUGCUAUUGCCGUUUC--UUUUCUAC--CUGCUUACACGGCUGCCUGCCUUAUUUUUCUCU--UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG .....((((((((....((....(((((...--........--........))))).....)).((((((.((...--..)).))))))................)))))))). ( -21.61, z-score = -2.12, R) >droGri2.scaffold_15112 3175811 110 + 5172618 UUCCAGCUAUUGCUAUUGCCAUUUCUUCCUU--UCUACUAC--CUGCUUACACUUUUACCUGCGUUAUUUUUCUCUCUUUCACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG .....((((((((...((.(((.((......--........--..((..............)).((((((.............))))))...)).))).))....)))))))). ( -14.56, z-score = -2.50, R) >consensus ______CGCCAGCUAUUGCCAUUUCCCUUUC__UCCGUUACC_CUGCUUACACUUUUACCUGCCUUAUUUUUCUCU__UUGACAAAUAAAUUGACAUGCCACAUUGCGAUAGCG ............................................((((................((((((.((.......)).))))))((((.((........)))))))))) ( -4.81 = -5.02 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:53 2011