| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,995,998 – 18,996,088 |
| Length | 90 |
| Max. P | 0.515291 |
| Location | 18,995,998 – 18,996,088 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 69.53 |
| Shannon entropy | 0.59409 |
| G+C content | 0.48481 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -8.21 |
| Energy contribution | -8.45 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.86 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18995998 90 + 21146708 ----------AGCCAAAU-UGGGAUCAAG--UUGUGGUUGGGCUUGGGUUCGAGUU------GUCCUUGAGUUCUUGUC-GGACAUG---GCUUCUGUUCGAUUU-CGAUGCUU ----------(((...((-((..((((((--(..((.((.(((..(..((((((..------...))))))..)..)))-.))))..---))))......)))..-))))))). ( -28.80, z-score = -1.87, R) >droPer1.super_2 5533004 93 - 9036312 ----------AGCCAAAAAUGGGAUCAAG--UUGUGGUUGGACUUGGGCUCGAGUU------GUCCUCGAGUUCUUGUCCGGACAUG---GCUUCUGUUCGAUUUGCGAUGCUU ----------(((...((((.((((.(((--(..((..(((((..(((((((((..------...)))))))))..)))))..))..---))))..)))).)))).....))). ( -37.20, z-score = -3.66, R) >dp4.chr3 16469431 93 - 19779522 ----------AGCCAAAAAUGGGAUCAAG--UUGUGGUUGGACUUGGGCUCGAGUU------GUCCUCGAGUUCUUGUCCGGACAUG---GCUUCUGUUCGAUUUGCGAUGCUU ----------(((...((((.((((.(((--(..((..(((((..(((((((((..------...)))))))))..)))))..))..---))))..)))).)))).....))). ( -37.20, z-score = -3.66, R) >droAna3.scaffold_13266 8093769 90 - 19884421 ----------AGCCAAAU-AGGGAUCAAG--UUGUGGUCGGAAUUCGGCUCGAGCU------GUCCUCGAGUGCUUGUC-GGACAUG---GCUUCUGUUCGAUUU-GGAUGCUU ----------..((((((-..((((.(((--(..((..(((......(((((((..------...))))))).....))-)..))..---))))..)))).))))-))...... ( -29.60, z-score = -1.04, R) >droEre2.scaffold_4845 20363365 90 + 22589142 ----------AGCCAAAU-UGGGAUCAAG--CUGUGGUUGGACUUGGGCUCGAGUU------GUCCUUGAGUUCUGGUC-GGACAUG---GCUUCUGUUCGAUUU-CGAUGCUU ----------(((...((-((..((((((--(((((.((.((((.(((((((((..------...))))))))).))))-.))))))---))))......)))..-))))))). ( -34.50, z-score = -3.01, R) >droYak2.chr2R 18959176 90 + 21139217 ----------AGCCAAAU-UGGGAUCAAG--UUGUGGUUGGACUUGGGCUCGAGUU------GUCCUUGAGUUCUUGUC-GGACAUG---GCUUCUGUUCGAUUU-CGAUGCUU ----------(((...((-((..((((((--(..((.((.(((..(((((((((..------...)))))))))..)))-.))))..---))))......)))..-))))))). ( -32.30, z-score = -2.81, R) >droSim1.chr2R_random 2827941 90 + 2996586 ----------AGCCAAAU-UGGGAUCAAG--UUGUGGUUGGACUUGGGCUCGAGUU------GUCCUUGAGUUCUUGUC-GGACAUG---GCUUCUGUUCGAUUU-CGAUGCUU ----------(((...((-((..((((((--(..((.((.(((..(((((((((..------...)))))))))..)))-.))))..---))))......)))..-))))))). ( -32.30, z-score = -2.81, R) >droSec1.super_9 2290827 90 + 3197100 ----------AGCCAAAU-UGGGAUCAAG--UUGUGGUUGGACUUGGGCUCGAGUU------GUCCUUGAGUUCUUGUC-GGACAUG---GCUUCUGUUCGAUUU-CGAUGCUU ----------(((...((-((..((((((--(..((.((.(((..(((((((((..------...)))))))))..)))-.))))..---))))......)))..-))))))). ( -32.30, z-score = -2.81, R) >droVir3.scaffold_12875 17654213 90 - 20611582 -------------UGGAAAUAGGAUAAGGUUCGGUUGGUUGAUUGC-CUCGGAGUU--------AGCGGGUUGCUCUGCCAGGGGCAU-GUCCUUCGUUUGAUUU-GGAUGCUU -------------.......((.((..((.((((.(((..((((((-(((((....--------(((.....)))...)).)))))).-)))..))).)))).))-..)).)). ( -20.20, z-score = 1.70, R) >droMoj3.scaffold_6496 22241829 91 + 26866924 -------------AACUAAGAGGAUAAACUUCAGUCGGUCGAUCCUUCCCUUGGUU--------GGCUGAGGGCUGGACGGCAUAUGU-CUCCAGCAUUCGAUUU-GGAUGCCU -------------..(((((.((((...(((((((((..(((........)))..)--------))))))))((((((.(((....))-)))))))))))..)))-))...... ( -33.70, z-score = -2.20, R) >droWil1.scaffold_180699 453272 113 + 2593675 UACAAAAUCAGAUCAGAUUGUGGUUUAACACUCACAAUCAGUUGUCAGCUGGAGUCCUUGGAAUCCUUGAAUUCUAAGCCGGACGUGUUGGCUUUCAUUCGAUUUGCAAUGCU- ........((((((.((((((((........))))))))....((((((....(((((((((((......)))))))...))))..))))))........)))))).......- ( -30.90, z-score = -1.47, R) >consensus __________AGCCAAAU_UGGGAUCAAG__UUGUGGUUGGACUUGGGCUCGAGUU______GUCCUUGAGUUCUUGUC_GGACAUG___GCUUCUGUUCGAUUU_CGAUGCUU ....................((.(((..............(((...((((((((...........))))))))...))).(((((..........))))).......))).)). ( -8.21 = -8.45 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:52 2011