| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,977,161 – 18,977,267 |
| Length | 106 |
| Max. P | 0.911521 |
| Location | 18,977,161 – 18,977,267 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 65.21 |
| Shannon entropy | 0.63337 |
| G+C content | 0.36441 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -8.41 |
| Energy contribution | -9.88 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18977161 106 + 21146708 ---CUCGCCUCUUCUCUCCACAGCUUUCCUAUCCACUCCUC-GCCCGUUUGUUUAUUUGUUUUCGCUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAU--- ---....................................((-((((((.((((.((((((....((((.....))))........)))))).))))...))))))))...--- ( -20.70, z-score = -3.97, R) >droYak2.chr2R 18940439 84 + 21139217 --------------------------CCUGCUCCACUGCUCCGCCCAUUUGUUUAUUUGUGUUGGCUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAU--- --------------------------...((......))..(((((((.((((.((((((((.(((((.....))))).....)))))))).)))).))..)))))....--- ( -19.40, z-score = -1.98, R) >droAna3.scaffold_13266 8071623 85 - 19884421 -------------------------UUGUCGUAGUCUCCCCGGCUCGUUUGUUUGUUUGUUUUGACUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAA--- -------------------------...........((((((...(((.((((.((((((...(((((.....))))).......)))))).)))).))))))).))...--- ( -17.40, z-score = -1.40, R) >dp4.chr3 16451238 93 - 19779522 ---------------GUGUGUGUAUAGUAUCUCUGCUGCUC--CUCGUCUGCUUAUUUGUUUUGACUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAA--- ---------------((((.(((((((((.....(((....--...(((.((......))...)))........)))..))))))))).....)))).............--- ( -15.86, z-score = -0.51, R) >droPer1.super_2 5514929 95 - 9036312 -------------GUGUGUGUGUGCAGUAUCUCUGCUGCUC--CUCGUCUGCUUAUUUGUUUUGACUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAA--- -------------.(((((((((((((((....))))))..--...........((((((...(((((.....))))).......))))))..)))))))))........--- ( -21.20, z-score = -1.67, R) >droGri2.scaffold_15112 1951680 113 - 5172618 UCUCUCGCUCCCUCCCGUUCACUCUAGCUGUAGGUUUAUACUGUUUGUGCGUCACCUUUCUUCGACUUUAAUUAAGUUUUACUAUACAAAUUAACACAUGCUGGUGAUAGAAG (((.(((((.(((.(.(((......))).).)))........((.((((.(((..........))).((((((..((........)).)))))))))).)).))))).))).. ( -14.50, z-score = 1.05, R) >consensus ________________U_U___U_UAGCUUCUCCACUGCUC_GCUCGUUUGUUUAUUUGUUUUGACUUUAAUUAAGUUUUAUUAUACAAAUUAACACAUGCGGGUGAAAA___ ..........................................((((((.((((.((((((...(((((.....))))).......)))))).))))...))))))........ ( -8.41 = -9.88 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:51 2011