| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,962,267 – 18,962,364 |
| Length | 97 |
| Max. P | 0.516673 |
| Location | 18,962,267 – 18,962,364 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 61.61 |
| Shannon entropy | 0.66150 |
| G+C content | 0.44097 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -6.94 |
| Energy contribution | -6.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18962267 97 + 21146708 UACAAAGGCGAAAAUACCAAGAGAAUGAUGUUAGUGU-GUGUGUUAGGUG--GGAAACUUGGCUGGGACUGUAGCUAAGUUCAACA----------CCAGGCGGAGAGGC ......((........))...............((.(-.(.(((..((((--...((((((((((......))))))))))...))----------))..))).).).)) ( -24.90, z-score = -1.24, R) >droSim1.chr2R 17545978 97 + 19596830 UACGCACGGAAAAAUACCAAGAGGAUGAUGUUAGUGU-GGAUGUUUGGUG--GGAAACUUGGUUGGGGAUGUAGCUGAGUUCAACA----------CCAGGCGGAGUGGC ..(((((.((...((.((....))))....)).))))-)..(((((((((--...((((..((((......))))..))))...))----------)))))))....... ( -28.60, z-score = -2.65, R) >droSec1.super_9 2253722 97 + 3197100 UGCGCACGGAAAAAUACCAAGAGGAUGAUGUUAGUGU-GGAUGUUUGGUG--GGAAACUUGGCUGGGGAUGUAGCUGAGUUCAACA----------CCAGGCGGAGAGGG ..(((((.((...((.((....))))....)).))))-)..(((((((((--...((((..((((......))))..))))...))----------)))))))....... ( -30.70, z-score = -3.08, R) >droYak2.chr2R 18924697 78 + 21139217 -ACCGGCGGAAAAAUACCAAAAG----AUAUUAGAGU-GGGUGUUGGGGU--GGAAACUUUGCUGAGGAUGUAGCAAGGUUCAAAA------------------------ -.(((.(.....((((((.....----..........-.))))))..).)--)).((((((((((......)))))))))).....------------------------ ( -17.29, z-score = -1.13, R) >triCas2.chrUn_13 72481 109 + 619829 UCUGAAAAUAAAAAUGCUAAAAGAAU-GUGACAAUGCAGAGUGCCUGAUUUUGGAAACUAAUAUGAAUAUGUAUUUCCAUCCAGUGAGUUUAUUUUCUAAGUUGAAAUAA ...(((((((((..((((........-.........(((.....)))....((((((...(((....)))...))))))...))))..)))))))))............. ( -15.30, z-score = -0.06, R) >consensus UACGAACGGAAAAAUACCAAGAGAAUGAUGUUAGUGU_GGGUGUUUGGUG__GGAAACUUGGCUGGGGAUGUAGCUAAGUUCAACA__________CCAGGCGGAGAGGC .......................................................((((((((((......))))))))))............................. ( -6.94 = -6.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:50 2011