| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,942,193 – 18,942,303 |
| Length | 110 |
| Max. P | 0.928256 |
| Location | 18,942,193 – 18,942,303 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.67 |
| Shannon entropy | 0.25952 |
| G+C content | 0.47056 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -13.30 |
| Energy contribution | -12.78 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18942193 110 - 21146708 UA-UUUUUCGCGUGUAUCUACAAAGUACAUAUGUAUGUACAUGUAUCUUUGUACGCGCAAUCGAUGCGUUACCCCUAUGCC-AACUCCUGCCCCCUCCCGCCACAAAACUCC ..-......((((((....((((((...((((((....))))))..)))))))))))).......((((.......)))).-.............................. ( -19.80, z-score = -2.23, R) >droSim1.chr2R 17525743 106 - 19596830 UA-UUUUUCGCGUGUAUCUACAAAGUGCA----CAUGUACAUGUAUCUUUGUACGCGCAAUCGAUGCGUUACCCCUACACC-AACUCGUGCCCCCUCCCGCCACGAAACUCC ..-......(.(((((..(((((((...(----(((....))))..))))))).(((((.....)))))......))))))-...((((((........).)))))...... ( -22.60, z-score = -2.43, R) >droSec1.super_9 2233584 106 - 3197100 UA-UUUUUCGCGUGUAUCUACAAAGUUCA----CAUGUACAUGUAUCUUUGUACGCGCAAUCGAUGCGUUACCCCUAUACC-AACUCCUGCCCCCUCCCGCCGCGAAACUCC ..-..(((((((.((...(((((((...(----(((....))))..))))))).(((((.....)))))............-.................))))))))).... ( -23.80, z-score = -3.94, R) >droYak2.chr2R 18904260 103 - 21139217 UA-UUCUUCACGUGUACUUUCAAAGUACA--------UACAUGUACUUUUGUGCGCGCAAUCGAUGCGUUACCCCUACACCAAACUCUUGCCCCUUUCCGCUGCAAAACUGC ..-........((((((....((((((((--------....)))))))).))))))(((.....)))....................((((..(.....)..))))...... ( -18.30, z-score = -1.65, R) >droEre2.scaffold_4845 20305490 104 - 22589142 UAUUUUUUUACGUGUACCUACAAAGUACA--------UACAUGUACUUUUGUACGCGCAACCGAUGCGUUACCCCUAUACCAAACUCUUGCCCCUUCCAGCGUCGAAACUGC ..........(((((((....((((((((--------....)))))))).)))))))....((((((................................))))))....... ( -22.15, z-score = -3.15, R) >consensus UA_UUUUUCGCGUGUAUCUACAAAGUACA_____AUGUACAUGUAUCUUUGUACGCGCAAUCGAUGCGUUACCCCUAUACC_AACUCCUGCCCCCUCCCGCCACGAAACUCC ...........(((((..(((((((((((............)))).))))))).(((((.....)))))......)))))................................ (-13.30 = -12.78 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:45 2011