| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,922,591 – 18,922,704 |
| Length | 113 |
| Max. P | 0.935371 |
| Location | 18,922,591 – 18,922,704 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 90.11 |
| Shannon entropy | 0.21123 |
| G+C content | 0.48276 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -24.56 |
| Energy contribution | -24.82 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18922591 113 + 21146708 GUUGGAGGCGACGCUGGCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGAGGGUGGCGGG--- ((((....))))((((.((((((((((((((.........))))))))))))((((((.....((((((....))))))....(((......))))))-)))..)).))))...--- ( -38.60, z-score = -2.79, R) >droAna3.scaffold_13266 15256304 113 + 19884421 GGCAGAGGCGACGCUGCCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGCGGGCGGCGGG--- .((....))..((((((((((((((((((((.........))))))))))))((((((.....((((((....))))))....(((......))))))-)))..))))))))..--- ( -46.80, z-score = -4.79, R) >droEre2.scaffold_4845 20285464 113 + 22589142 GUUGGAGGCGACGCUGGCCGCUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGAGGGUGGCGGG--- ((((....)))).((.(((((((((((((((.........)))))))))..(((((((.....((((((....))))))....(((......))))))-))))..)))))).))--- ( -38.30, z-score = -2.51, R) >droYak2.chr2R 18884275 113 + 21139217 GUUGGAGGCGACGCUGGCCGCUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGCGGGUGGCGGG--- ((((....))))((((.((((((((((((((.........))))))))))..((((((.....((((((....))))))....(((......))))))-))))))).))))...--- ( -39.30, z-score = -2.49, R) >droSec1.super_9 2214159 113 + 3197100 GUUGGAGGCGACGCUGGCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGAGGGUGGCGGG--- ((((....))))((((.((((((((((((((.........))))))))))))((((((.....((((((....))))))....(((......))))))-)))..)).))))...--- ( -38.60, z-score = -2.79, R) >droSim1.chr2R 17510871 113 + 19596830 GUUGGAGGCGACGCUGGCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC-GGCGAGGGUGGCGGG--- ((((....))))((((.((((((((((((((.........))))))))))))((((((.....((((((....))))))....(((......))))))-)))..)).))))...--- ( -38.60, z-score = -2.79, R) >droWil1.scaffold_180699 2011175 103 - 2593675 GUUGGAGGCGAUGCUGGCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGAUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUU--------GGAUGGC------ .......((.((.(..(((((((((((((((.........))))))))))))((((....)).((((((....))))))..)).........))).--------.))).))------ ( -31.40, z-score = -2.92, R) >droPer1.super_2 2648808 117 + 9036312 GUUGGAGGCGACGCUCUCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUGCUGGAGAAAGACGGCGACCGG ...((((((...)).))))((((((((((((.........))))))))))))..((....)).((((((....))))))............((((((((........)))).)))). ( -38.30, z-score = -3.23, R) >dp4.chr3 2460057 117 + 19779522 GUUGGAGGCGACGCUCUCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGCAAACCACAGUUUACAUUCACUCAAUUCGGUGCUGGAGAAAGACGGCGACCGG ...((((((...)).))))((((((((((((.........))))))))))))((((....).)))..........................((((((((........)))).)))). ( -36.80, z-score = -2.70, R) >droVir3.scaffold_12875 7097412 109 + 20611582 GUUGGAGGCGACGCUGCCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUUGGUGC--GACAAGGCAGGC------ ((((....)))).(((((.((((((((((((.........))))))))))))((((....)).((((((....))))))................))--.....)))))..------ ( -33.50, z-score = -2.30, R) >droMoj3.scaffold_6496 25809989 109 + 26866924 GUUGCAGGCGACGCUGCCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUUGGUGC--GACAAGGCAGGC------ ((((....)))).(((((.((((((((((((.........))))))))))))((((....)).((((((....))))))................))--.....)))))..------ ( -34.50, z-score = -2.48, R) >droGri2.scaffold_15245 643169 112 + 18325388 GUUGGAGGCGACGCUGCCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUUGGUGC--GACA-AGCUGGCGGGC-- ((((....))))...((((((((((((((((.........))))))))))))((..(......((((((....))))))...((((......)))).--....-..)..))))))-- ( -35.60, z-score = -2.18, R) >consensus GUUGGAGGCGACGCUGGCCGUUGUUAUAGUGCAGAAAAAUUACUAUGACAACGCUGGAAACAAGUAAACCACAGUUUACAUUCACUCAAUUCGGUUCC_GGCGAGGGUGGCGGG___ ((((....))))(((...(((((((((((((.........))))))))))))).((....)).((((((....)))))).............................)))...... (-24.56 = -24.82 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:44 2011