| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,921,841 – 18,921,939 |
| Length | 98 |
| Max. P | 0.583429 |
| Location | 18,921,841 – 18,921,939 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 64.60 |
| Shannon entropy | 0.62945 |
| G+C content | 0.45574 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -9.84 |
| Energy contribution | -11.12 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18921841 98 + 21146708 UCCACUCCAGAGCAGGUGCCCUCUCAAAAGCCACACAGU------UUGCGGCAAAGUUAGCCGGUGAGUUGGCUAAGUUUGAGGCAAAUGUGUUCUUGGGUAAC ...((((.((((((.((..((((......(((.((....------.)).)))(((.((((((((....)))))))).)))))))...)).)))))).))))... ( -35.30, z-score = -2.15, R) >droSim1.chr2R 17510097 103 + 19596830 UCCACUCCAGAGCAGGUGCCCUCU-GAAGGCCCCACAGUAUAAGUUUGCGGCAAAUGUAGCCGGUGAGUUGGCCAAGUUAGAGGCAGAUGUGUUCUUGGGUAAC ...((((.((((((.((..(((((-((.((((((((.(((......)))(((.......))).))).)..))))...)))))))...)).)))))).))))... ( -37.10, z-score = -1.94, R) >droSec1.super_9 2213474 103 + 3197100 UCCACUCCAGAGCAGGUGCCCUCU-GAAAGCCCCACAGUAUAAGUUAGCGGCAAAUGUAGCCGGUGAGUUGGCGAAGUUAGAGGCAGAUGUGUUCUUGGGUAAC ...((((.((((((.((..(((((-((..(((.........((.(((.((((.......)))).))).)))))....)))))))...)).)))))).))))... ( -35.10, z-score = -1.96, R) >droEre2.scaffold_4845 20284687 101 + 22589142 UCCACUCCAGAGCAGGUGCCCUCU-GAAAACCACAUAGGAUUUCUCUGCGGCAAAGGUUGCCGGUGAGUUGGUUGAGUUAGAAUCAUUUAUGCUCU--GGUAAC ......((((((((.(((...(((-((.(((((..........(((..(((((.....)))))..))).)))))...)))))..)))...))))))--)).... ( -32.70, z-score = -1.62, R) >dp4.chr3 2459421 94 + 19779522 -UCAUUC-AGAUCAGGUGGUAUUU-UUGAGCAAUUUUGAA-----UGGAGACUUUAUUUAAAGAUGA--UGGCAAAAAUCUACUGAAACAUGGUCUAGAUUCGC -....((-(((((((((((.((((-(((..((.(((((((-----((((...))))))))))).)).--...))))))))))))......)))))).))..... ( -20.80, z-score = -1.27, R) >droPer1.super_2 2648172 94 + 9036312 -UCAUUC-AGAUCAGGUGGUAUUU-UUGAGCAAUUUUGAA-----UGGAGACUUUAUUUAAAGAUGA--UGGCAAAAAUCUACUGAAACAUGGUCUAGAUUCGC -....((-(((((((((((.((((-(((..((.(((((((-----((((...))))))))))).)).--...))))))))))))......)))))).))..... ( -20.80, z-score = -1.27, R) >consensus UCCACUCCAGAGCAGGUGCCCUCU_GAAAGCCACACAGUA_____UUGCGGCAAAAGUAGCCGGUGAGUUGGCAAAGUUAGAGGCAAAUAUGUUCUUGGGUAAC ...((((.(((((((((............)))................((((.......))))...........................)))))).))))... ( -9.84 = -11.12 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:43 2011