| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,918,386 – 18,918,500 |
| Length | 114 |
| Max. P | 0.594335 |
| Location | 18,918,386 – 18,918,500 |
|---|---|
| Length | 114 |
| Sequences | 10 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 88.01 |
| Shannon entropy | 0.25047 |
| G+C content | 0.41502 |
| Mean single sequence MFE | -34.21 |
| Consensus MFE | -26.66 |
| Energy contribution | -27.13 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18918386 114 - 21146708 UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCACAGGAA------ ((((..((((((.........))))))...))))...((((((((((.((((((((((.((((.....))))..))))))))))....)))))------...(((.....))))))))..------ ( -33.00, z-score = -1.27, R) >droSim1.chr2R 17506632 114 - 19596830 UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCACAGGAA------ ((((..((((((.........))))))...))))...((((((((((.((((((((((.((((.....))))..))))))))))....)))))------...(((.....))))))))..------ ( -33.00, z-score = -1.27, R) >droSec1.super_9 2210041 114 - 3197100 UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCACAGGAA------ ((((..((((((.........))))))...))))...((((((((((.((((((((((.((((.....))))..))))))))))....)))))------...(((.....))))))))..------ ( -33.00, z-score = -1.27, R) >droYak2.chr2R 18879925 114 - 21139217 UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCACAGGAA------ ((((..((((((.........))))))...))))...((((((((((.((((((((((.((((.....))))..))))))))))....)))))------...(((.....))))))))..------ ( -33.00, z-score = -1.27, R) >droEre2.scaffold_4845 20281230 114 - 22589142 UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCACAGGAA------ ((((..((((((.........))))))...))))...((((((((((.((((((((((.((((.....))))..))))))))))....)))))------...(((.....))))))))..------ ( -33.00, z-score = -1.27, R) >droAna3.scaffold_13266 15252153 126 - 19884421 UGUUGUUGUUUCAUUUCAUUUGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUCGCUUUGGUUUUGGCCAAGAGCCACUGCCACAGGAA ((((..(((((((.......)))))))...))))...((((((.....((((((((((.((((.....))))..)))))))))).......((..(((((((.....)))))))..)))))))).. ( -40.40, z-score = -1.84, R) >dp4.chr3 2455723 112 - 19779522 GGUUGUUGUUUCAUUUCAUUUGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCA----CACA---- .(((..(((((((.......)))))))...)))......(((((....((((((((((.((((.....))))..)))))))))).((((((..------........)))))))----))))---- ( -33.70, z-score = -1.66, R) >droPer1.super_2 2644506 112 - 9036312 GGUUGUUGUUUCAUUUCAUUUGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC------UUUGGCCAAGAGCCA----CACA---- .(((..(((((((.......)))))))...)))......(((((....((((((((((.((((.....))))..)))))))))).((((((..------........)))))))----))))---- ( -33.70, z-score = -1.66, R) >droWil1.scaffold_180699 2004012 116 + 2593675 UGUUGUUGUUUCAUUUCGUU-GAGGCAUAAGGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGGGCCACUUGAUUGGUUUCUU-ACAGGAAAGCCAAAAAACCCCAAA-------- ((((..(((((((......)-))))))...))))...............(((((((((.((((.....))))..)))))))))(((((((((.-...)).)))))))...........-------- ( -32.50, z-score = -1.27, R) >droMoj3.scaffold_6496 25804481 113 - 26866924 UGUUGUUGUUUCAUUUCGUU-GGGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUACUUCUGACCAGCUCAGCAGCAG------------ ((((((((........((((-...(((((((......))))))).))))(((((((((.((((.....))))..)))))))))((((((........))))))..)))))))).------------ ( -36.80, z-score = -2.21, R) >consensus UGUUGUUGUUUCAUUUCAUUGGAGGCAUAAAGCAAGAUUUGUGUAAAUGUCAGGUGGUAAUAGUGACACUGUGCGCCACUUGAUUGGUUUUAC______UUUGGCCAAGAGCCACAGGAA______ .(((..((((((.........))))))...))).........(((((.((((((((((.((((.....))))..))))))))))....)))))........((((.....))))............ (-26.66 = -27.13 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:42 2011