| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,912,832 – 18,912,922 |
| Length | 90 |
| Max. P | 0.702243 |
| Location | 18,912,832 – 18,912,922 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Shannon entropy | 0.42451 |
| G+C content | 0.53429 |
| Mean single sequence MFE | -22.59 |
| Consensus MFE | -11.92 |
| Energy contribution | -12.19 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18912832 90 + 21146708 ------CGGCAGCCUUAUA-AGGCUCUCAACUCU-AAACUCCUAACGGACUGAGCACGCACUCCGACUCCAA----GUCCAACUA-AGACGCUGAAUCCGAUU------ ------(((((((((....-))))).........-...........((((((((..((.....)).)))..)----)))).....-....)))).........------ ( -19.50, z-score = -1.43, R) >droSim1.chr2R 17501164 96 + 19596830 ------CGGCAGCCUUAUA-AGGCUCUCAACUCU-AAACUCCUAACGGACUGAGCACGCACUCCGACUCCAA----GUCCAACUA-AGACGCUGAAUCCCACUCCGACU ------(((((((((....-))))).........-...........((((((((..((.....)).)))..)----)))).....-....))))............... ( -19.50, z-score = -1.38, R) >droSec1.super_9 2204575 96 + 3197100 ------CGGCAGCCUUAUA-AGGCUCUCAACUCU-AAACUCCUAACGGACUGAGCACGCACUCCGACUCCAA----GUCCAACUA-AGACGCUGAAUCCCACUCCGACU ------(((((((((....-))))).........-...........((((((((..((.....)).)))..)----)))).....-....))))............... ( -19.50, z-score = -1.38, R) >droYak2.chr2R 18874104 96 + 21139217 ------CGGCAGCCUUAUA-AGGCUCUCAACUCU-AAACUCCUAACGGACUGAGCACGCACUCCGACUCCAA----GUCCAACUA-AGACGCCGAAUCCGACUCUGACU ------(((((((((....-))))).........-...........((((((((..((.....)).)))..)----)))).....-....))))............... ( -21.70, z-score = -1.71, R) >droEre2.scaffold_4845 20275420 92 + 22589142 ------CGGCAGCCUUAUA-AGGCUCUCAACUCU-AAACUCCUAACGGACUGAGCACGCACUCCGACUUCAACUAAGUCCAACUA-AGACGCUGAAUCCGA-------- ------.((.(((((....-))))).))......-..........((((.(.(((.........(((((.....)))))......-....))).).)))).-------- ( -19.61, z-score = -1.46, R) >droAna3.scaffold_13266 15247674 91 + 19884421 CAGCAGCAGUAGCCUUAUAUGGGCUCUCAACUCU-AAACUCCUAACGGACUGGGCACGCACUCCGACUC--G--GACUCCAGUUCCAAGCUGCAGA------------- ..(((((((.(((((.....))))))).......-...........((((((((....)..((((...)--)--))..)))))))...)))))...------------- ( -28.30, z-score = -1.74, R) >dp4.chr3 2449390 100 + 19779522 GAGAGUCGGCAGCCUUAUA-AGGCUCUCAACUCUUAAACUCCUAACGGACCGAGCACGCACUCCGACUCUCG--ACUCCCGACUCCCGACUCCGACAUCAUCU------ (((((((((.(((((....-))))).....(((......(((....)))..)))........))))))))).--.............................------ ( -26.30, z-score = -2.42, R) >droPer1.super_2 2638194 100 + 9036312 GAGAGUCGGCAGCCUUAUA-AGGCUCUCAACUCUUAAACUCCUAACGGACCGAGCACGCACUCCGACUCUCG--ACUCCCGACUCCCGACUCCGACAUCAUCU------ (((((((((.(((((....-))))).....(((......(((....)))..)))........))))))))).--.............................------ ( -26.30, z-score = -2.42, R) >consensus ______CGGCAGCCUUAUA_AGGCUCUCAACUCU_AAACUCCUAACGGACUGAGCACGCACUCCGACUCCAA____GUCCAACUA_AGACGCCGAAUCCGACU______ .......((.(((((.....))))).)).................((((.((......)).))))............................................ (-11.92 = -12.19 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:41 2011