| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,910,396 – 18,910,494 |
| Length | 98 |
| Max. P | 0.715545 |
| Location | 18,910,396 – 18,910,494 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.89 |
| Shannon entropy | 0.31425 |
| G+C content | 0.55397 |
| Mean single sequence MFE | -32.15 |
| Consensus MFE | -22.97 |
| Energy contribution | -22.64 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18910396 98 - 21146708 -------------CCCCCCGCCGCGC---UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGACC -------------...((((....((---...(((.......)))..))((.((((((((((((.(((((((.....)).))))).))))))))).)))..))....))))... ( -29.60, z-score = -1.16, R) >droSim1.chr2R 17498766 98 - 19596830 -------------CCCCCCGCCGCGC---UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGCCC -------------...((((....((---...(((.......)))..))((.((((((((((((.(((((((.....)).))))).))))))))).)))..))....))))... ( -28.90, z-score = -0.74, R) >droSec1.super_9 2202212 98 - 3197100 -------------CCCCCCGCCGCGC---UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGACC -------------...((((....((---...(((.......)))..))((.((((((((((((.(((((((.....)).))))).))))))))).)))..))....))))... ( -29.60, z-score = -1.16, R) >droYak2.chr2R 18871696 98 - 21139217 -------------CCCCCCGCCGCGC---UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCCGGGACC -------------...((((....((---...(((.......)))..))((.((((((((((((.(((((((.....)).))))).))))))))).)))..))....))))... ( -29.60, z-score = -1.16, R) >droEre2.scaffold_4845 20272945 98 - 22589142 -------------CCCCCCGCCGCGC---UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGAUCCGGGGACC -------------..((((((((.((---...(((.......)))..)).).((((((((((((.(((((((.....)).))))).))))))))).)))..))...)))))... ( -33.00, z-score = -1.72, R) >droAna3.scaffold_13266 15245549 104 - 19884421 --------CCCAGCCCCCCGCCGCGCU--UCUACACCCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCGAUGCACGCCAGGACCCCGGUCCC --------....((....(((.(.((.--...(((.......)))..)).).)))(((((((((.(((((((.....)).))))).)))))))))..))..((((....)))). ( -28.70, z-score = -1.24, R) >droWil1.scaffold_180699 1993470 112 + 2593675 CUGUCGUCGUCGCCCUCCCGCCGGGCU--CCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAAAC .(((((((.(.((.....(((.((((.--...(((.......)))..)))).)))(((((((((.(((((((.....)).))))).)))))))))..)).).))))..)))... ( -35.70, z-score = -1.56, R) >dp4.chr3 2446260 104 - 19779522 -------CGUCGCCCUCCUGCCGGGCU---CUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUCCCGAGUCC -------..(((...(((((..((((.---..(((.......)))..)))).((((((((((((.(((((((.....)).))))).))))))))).))))))))...))).... ( -37.90, z-score = -3.19, R) >droPer1.super_2 2635074 104 - 9036312 -------CGUCGCCCUCCUGCCGGGCU---CUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUAGCGAGUCC -------..((((..(((((..((((.---..(((.......)))..)))).((((((((((((.(((((((.....)).))))).))))))))).))))))))..)))).... ( -42.40, z-score = -4.21, R) >droMoj3.scaffold_6496 25793672 104 - 26866924 ----------UGCCCCUCUGCUGCACUCGCUUCCACUCAAUUUGUUUGCCCUGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAGCC ----------.........(((((....((....((.......))..))(((((((((((((((.(((((((.....)).))))).))))))))).)).)))).....))))). ( -33.40, z-score = -1.66, R) >droVir3.scaffold_12875 7081434 104 - 20611582 ----------UAACUCUUAACUGCACUCGCUUCCACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUGCCGCAGCC ----------..........((((....((.(((...(((.....)))....((((((((((((.(((((((.....)).))))).))))))))).)))..))).)).)))).. ( -29.80, z-score = -1.63, R) >droGri2.scaffold_15245 630019 99 - 18325388 ----------UUCUCGCUUGCAGCACUCGCUUCCACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAGUGCACGCCAGGAUGCCG----- ----------.....((.....))....((.(((...(((.....)))....((((((((((((.(((((((.....)).))))).))))))))).)))..))).))..----- ( -27.20, z-score = -0.24, R) >consensus _____________CCCCCCGCCGCGCU__UCUACACUCAAUUUGUUUGCCCAGCGGCAUUGAGAAUUGGAGUGUCAAACUUUCAGCUUUCAAUGCACGCCAGGAUCCCGGGACC ................................................((..((((((((((((.(((((((.....)).))))).))))))))).)))..))........... (-22.97 = -22.64 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:40 2011