| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,904,019 – 18,904,116 |
| Length | 97 |
| Max. P | 0.839111 |
| Location | 18,904,019 – 18,904,116 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.51 |
| Shannon entropy | 0.28495 |
| G+C content | 0.37871 |
| Mean single sequence MFE | -17.89 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.39 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18904019 97 - 21146708 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUCUCU-------------------- ((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-.......-------------------- ( -19.00, z-score = -2.55, R) >droSim1.chr2R 17492429 97 - 19596830 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUCUCU-------------------- ((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-.......-------------------- ( -19.00, z-score = -2.55, R) >droSec1.super_9 2195934 97 - 3197100 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUCUCU-------------------- ((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-.......-------------------- ( -19.00, z-score = -2.55, R) >droYak2.chr2R 18865215 97 - 21139217 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUCUCU-------------------- ((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-.......-------------------- ( -19.00, z-score = -2.55, R) >droEre2.scaffold_4845 20265867 97 - 22589142 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGUUUU-UCUCUCU-------------------- ((.((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).)))))).))......-.......-------------------- ( -19.00, z-score = -2.55, R) >droAna3.scaffold_13266 15239786 118 - 19884421 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUCGCCUGGGCUUCGUCUCCCCAGCUCUCAGCUCCAGCUCCC ...((((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))))(((((.........))))).....(((....)))... ( -25.00, z-score = -2.99, R) >droWil1.scaffold_180699 1983762 104 + 2593675 GAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUAGUUGGGUUUUGCCCUCGCUUCCUC-------------- (((((((((((.((((...........((((.....))))(((..((((..........))))-.))).....))))..)))).(((.....))))))))))...-------------- ( -23.10, z-score = -2.72, R) >droVir3.scaffold_12875 7075849 85 - 20611582 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUGGUUUU--------------------------------- .((.(((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))).))..--------------------------------- ( -13.00, z-score = -0.73, R) >droMoj3.scaffold_6496 25787319 85 - 26866924 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU-UUGUAAUUUAUUGUUUGGUUUU--------------------------------- .((.(((((.((.((((((((......((((.....)))).....((((..........))))-)))))))).)).))))).))..--------------------------------- ( -13.00, z-score = -0.73, R) >droGri2.scaffold_15245 623396 86 - 18325388 CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUUCUUUUUAUUUAUUGUUUGGUUUU--------------------------------- (((((((....................((((.....)))).....((((..........))))...........))))))).....--------------------------------- ( -9.80, z-score = -0.13, R) >consensus CAAGCGAACUGUCAAUUAUAACCAAUCGCACACCAAGUGCACAUUAAACCCUAUCAACUGUUU_UUGUAAUUUAUUGUUCGCCUGGGUUUU_UCUCUCU____________________ ..(((((((.((.((((((((......((((.....)))).....((((..........)))).)))))))).)).))))).))................................... (-12.57 = -12.39 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:39 2011