| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,894,562 – 18,894,652 |
| Length | 90 |
| Max. P | 0.697374 |
| Location | 18,894,562 – 18,894,652 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 93.01 |
| Shannon entropy | 0.15037 |
| G+C content | 0.53251 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -25.87 |
| Energy contribution | -25.96 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18894562 90 + 21146708 UCUAGACACAUGGCGCACCAGAGGUGACAGCUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCGCCGAUG ...........(((((.((((..(((((((....)))))))..))))..........(((((...-..)))))...)))))-.......... ( -28.20, z-score = -0.71, R) >droSim1.chr2R 17482531 90 + 19596830 UCUAGACACAUGGCGCACCAGAGGUGACAGCUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCGACGAUG ....((((..((((.((((...))))...))))..))))(((((((((.........(((((...-..)))))........-))))))))). ( -28.43, z-score = -1.09, R) >droSec1.super_9 2186459 90 + 3197100 UCUAGACACAUGGCGCACCAGAGGUGACAGCUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCGACGAUG ....((((..((((.((((...))))...))))..))))(((((((((.........(((((...-..)))))........-))))))))). ( -28.43, z-score = -1.09, R) >droYak2.chr2R 18855249 90 + 21139217 UCUAGACACAUGGCGCACCAGAGGUGACAGCUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCAACGAUG ....((((..((((.((((...))))...))))..))))(((((((((.........(((((...-..)))))........-))))))))). ( -28.73, z-score = -1.43, R) >droEre2.scaffold_4845 20256235 90 + 22589142 UCUAGACACAUGGCGCACCAGAGGUGACAGCUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCAGCGCUG ...........(((((.((((..(((((((....)))))))..))))..........(((((...-..)))))...)))))-((....)).. ( -28.40, z-score = -0.45, R) >droAna3.scaffold_13266 15229205 90 + 19884421 UCUAGACACAUGGCGCACCAAAGGUGACAGUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CAGUCUGCACGCGCC-GCCAACGAUG ...........(((((.((((..(((((((....)))))))..))))..........(((((...-..)))))...)))))-.......... ( -29.00, z-score = -1.99, R) >dp4.chr3 2429622 90 + 19779522 UCUAGACAUGUGGCGCACCAGAGGUGACAGUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCAACGAUG .........(((((((.((((..(((((((....)))))))..))))..........(((((...-..)))))...)))))-))........ ( -31.40, z-score = -2.00, R) >droPer1.super_2 2619369 90 + 9036312 UCUAGACAUGUGGCGCACCAGAGGUGACAGUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA-CCGUCUGCACGCGCC-GCCAACGAUG .........(((((((.((((..(((((((....)))))))..))))..........(((((...-..)))))...)))))-))........ ( -31.40, z-score = -2.00, R) >droWil1.scaffold_180699 1971588 89 - 2593675 UCUAGACA--UGGCGCACCAGAGGUGACAUUUGAUUGUCAUUGUUGGCAUAUUAAAAGAGUCCCA-CAGUCUGCACGCGCCUGCCGCCAAUA ....(.((--.(((((..((((((.(((.(((((((((((....))))).))))))...))))).-...))))...))))))).)....... ( -24.60, z-score = -0.78, R) >droVir3.scaffold_12875 7064706 89 + 20611582 UCUAGACA--UGGCGCACCAGAGGUGACAUUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCAGCCGUCUGCACGCGCC-GCCAGCGACG ........--.(((((.((((..((((((......))))))..))))..........(((((......)))))...)))))-.......... ( -29.00, z-score = -1.28, R) >droMoj3.scaffold_6496 25773017 89 + 26866924 UCUAGACA--UGGCGCACCAGAGGUGACAUUUGAUUGUCAUUCUUGGCAUAUUAAAGCAGGCUCAACCGUCUGCACGCGCC-GCCAGCGACG ........--.(((((.((((..((((((......))))))..)))).........((((((......))))))..)))))-.......... ( -34.10, z-score = -3.31, R) >droGri2.scaffold_15245 612477 89 + 18325388 UCUAGACA--UGGCGCACCAGAGGUGACAUUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCAGCCGUCUGCACGCGCC-GCCAGCGACG ........--.(((((.((((..((((((......))))))..))))..........(((((......)))))...)))))-.......... ( -29.00, z-score = -1.28, R) >consensus UCUAGACACAUGGCGCACCAGAGGUGACAGUUGAUUGUCAUUGUUGGCAUAUUAAAACAGGCUCA_CCGUCUGCACGCGCC_GCCAACGAUG ...........(((((.((((..((((((......))))))..))))..........(((((......)))))...)))))........... (-25.87 = -25.96 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:36 2011