| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,867,458 – 18,867,554 |
| Length | 96 |
| Max. P | 0.802110 |
| Location | 18,867,458 – 18,867,554 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 76.57 |
| Shannon entropy | 0.32693 |
| G+C content | 0.33322 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -13.09 |
| Energy contribution | -15.77 |
| Covariance contribution | 2.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18867458 96 - 21146708 UUCAAAUUAUAUUAUUUCUGAAUGGCUUUUUAGAAAUUAAUAAUUACAUAUGACAACCAUGUGCGCUGGCUACUGGGUGUGCGUGUGUGUGUGUGU ....((((((...(((((((((......)))))))))..))))))((((((.(((..((((..((((.(....).))))..))))..))))))))) ( -28.50, z-score = -3.10, R) >droEre2.scaffold_4845 20224613 94 - 22589142 UUCAAAUUAUAUUAUUUCUGAAUGGCUUUUUAGAAAUUAAUAAUUACAUAUGACAACCAUGUGCGCUGGCUUCUGGGUGUGCGUGUGUGUCCGU-- ....((((((...(((((((((......)))))))))..))))))......((((..((((..((((.(....).))))..))))..))))...-- ( -26.70, z-score = -2.96, R) >droAna3.scaffold_13266 15200369 74 - 19884421 UUCAAAUUAUAUUAUUUUUGAAUGGCUUUUUAGAAAUUAAUAAUUACAUAUGACAGCCGACAGUGUGUG----UGGGU------------------ ....((((((...(((((((((......)))))))))..))))))..........(((.(((.....))----).)))------------------ ( -12.00, z-score = -0.46, R) >consensus UUCAAAUUAUAUUAUUUCUGAAUGGCUUUUUAGAAAUUAAUAAUUACAUAUGACAACCAUGUGCGCUGGCU_CUGGGUGUGCGUGUGUGU__GU__ ....((((((...(((((((((......)))))))))..))))))((((((((((.(((...((....))...))).))).)))))))........ (-13.09 = -15.77 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:34 2011