| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,855,654 – 18,855,745 |
| Length | 91 |
| Max. P | 0.908783 |
| Location | 18,855,654 – 18,855,745 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.07 |
| Shannon entropy | 0.33146 |
| G+C content | 0.41752 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -13.27 |
| Energy contribution | -14.39 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18855654 91 - 21146708 GCAUGAGGUGUCUCUGCGAUAUACCCCUCCGCAUCUUGGAAAC----AUCUAGAUAUACUCUUUAGCCACUUCAUAUUGUGAAACCACAUACAAC-------- ..((((((((.((..(((...........)))((((((....)----)...)))).........)).))))))))..((((....))))......-------- ( -18.80, z-score = -2.00, R) >droYak2.chr2R 18815713 103 - 21139217 GCAUGAGGUGUCUCUGCGAUAUACCGCACCGCAUCUUGAAAACCUGUAUACACAUACAUUCUUUAGCCAUUUUAAAUUGCGAUGCCACAUGCCACAGAAAACC (((((.((((((..((((......))))..(((..((((((...(((((....)))))..(....)...))))))..))))))))).)))))........... ( -24.60, z-score = -2.78, R) >droEre2.scaffold_4845 20212783 93 - 22589142 GCAUGAGGUGUCUCUGCGAUAUACCGCUCUGCAUCUUGAAA----------ACAUAUAUUCUUCAGCCAUUUUAAAUUGUUAUACCACAUGCCACAAAAAACC (((((.(((((....(((......)))...(((..((((((----------..................))))))..))).))))).)))))........... ( -16.37, z-score = -1.47, R) >consensus GCAUGAGGUGUCUCUGCGAUAUACCGCUCCGCAUCUUGAAAAC____AU__ACAUAUAUUCUUUAGCCAUUUUAAAUUGUGAUACCACAUGCCACA_AAAACC (((((.((((((...(((......)))...(((..((((((............................))))))..))))))))).)))))........... (-13.27 = -14.39 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:33 2011