| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,685,766 – 3,685,859 |
| Length | 93 |
| Max. P | 0.508392 |
| Location | 3,685,766 – 3,685,859 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.55 |
| Shannon entropy | 0.62593 |
| G+C content | 0.35880 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -5.99 |
| Energy contribution | -5.89 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3685766 93 - 23011544 -AGAAUUAGACA--AACAAACAAUAAAAUUGAUGGCAAGUGUCGCGUUUUGUCAUCAAGCUGCGACAAAAACAACUGCCAGAAAAAAAA-UAAAGGA-------------------- -...........--..............((..(((((..(((((((.((((....)))).)))))))........)))))..)).....-.......-------------------- ( -17.80, z-score = -1.65, R) >droPer1.super_1 3747301 104 + 10282868 -GGAAUUAGACA--AACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAA------ACAGCGACAGCGACAGCGA---CAAAAACAACUGCCAGGAAAAAUAAAGAAA- -...........--..............(((.(((((..((((((...(((((((...------...))))))).....))))---))........))))).)))...........- ( -21.70, z-score = -2.50, R) >dp4.chr4_group3 6647801 98 + 11692001 -GGAAUUAGACA--AACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAA------ACAG------CGACAGCGA---CAAAAACAACUGCCAGGAAAAAUAAAGAAA- -...........--..............(((.(((((..((((((....((((((...------...)------)))))))))---))........))))).)))...........- ( -21.00, z-score = -3.03, R) >droAna3.scaffold_12916 5742173 88 - 16180835 -GGAAUUAGACA--AACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCAUCAAGCAGCGACAAAAACAACUG-CCAGGAAAAAAAUG------------------------- -...........--..............(((.(((((..((((((..((((....))))..))))))........))-))).))).......------------------------- ( -15.90, z-score = -1.74, R) >droEre2.scaffold_4929 3722532 93 - 26641161 -GGAAUUAGACA--AACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGCCAUCAAGCUGCGACAAAAACAACUGCCAGCAAAAAAA-UAAAGCA-------------------- -...........--..............(((((((((((........)))))))))))((((.(.((........))))))).......-.......-------------------- ( -20.60, z-score = -2.24, R) >droYak2.chr2L 3679681 94 - 22324452 -GGAAUUAGACA--AACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCUGCGACAAAAACAACUGGCAGGAAAAAAAGUAAAGGA-------------------- -........((.--..............(((((((((((........))))))))))).((((..............))))........))......-------------------- ( -16.24, z-score = -0.96, R) >droSec1.super_5 1781380 93 - 5866729 -GGAAUUAGACA--AACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCUGCGACAAAAACAACUGCCAGCAAAAAAA-UAAAGGA-------------------- -...........--..............(((.(((((..(((((((.((((....)))).)))))))........))))).))).....-.......-------------------- ( -20.00, z-score = -2.36, R) >droSim1.chr2L 3643236 92 - 22036055 -GGAAUUAGACA--AACAAACAAUAAAAUUGAUGGCAAGUGUCGCAUUUUGUCAUCAAGCUGCGACAAAAACAACUGCCAGGAAAAAA--UAAAGGA-------------------- -...........--..................(((((..(((((((.((((....)))).)))))))........)))))........--.......-------------------- ( -18.10, z-score = -1.80, R) >droWil1.scaffold_180708 9442297 92 - 12563649 AAGAAUUAGACA--AACAAACAAU-AAAUUUAUGGCAAGUGUCGCAUUUUGUCAACAAUU--UGACAAAAGCAACUA-CAACAGGAAUGCUGAGGCGA------------------- ..(..((((.((--..........-........(((....)))((.(((((((((....)--)))))))))).....-.........))))))..)..------------------- ( -17.10, z-score = -1.32, R) >droMoj3.scaffold_6500 18016878 113 - 32352404 -GGCAUUAAGCAACAACAAACAAU-AAAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAUU--UGACAAUAACAAUGCCAAAGAGCAGAAGAACAACAACUGCCAGAAAAAAAAAAAA -((((((..((.(((.....((..-.......)).....))).))...((((((......--))))))....))))))...(.((((..(.....)..))))).............. ( -20.90, z-score = -1.70, R) >droVir3.scaffold_12963 15041691 113 - 20206255 -GGCAUUAGGCAACAGCAAACAAU-AAAUUUAUGGCAAGUGUCGCAUUUUGUCCUCAAUU--UGACAAUAACAAUGCGACUGAGCACAAAAACAACUGCUAGCAAAAAAAGAAAAAA -.((....(....)((((..((..-.......))((....(((((((((((((.......--.)))))....))))))))...))...........)))).)).............. ( -21.10, z-score = -0.63, R) >droGri2.scaffold_15126 4052308 113 + 8399593 -GGCAUUAGGCAACAACAAACAAU-ACAUUUAUGGCAAGUGUCGCAUUUUGUCGUCAAUU--UGACAAUAACAAUGCCACCGAGCACAGAAACAACUGGCAGCAAAAAAGGAAAGAA -((((((.(....)..........-........((((((........))))))(((....--.)))......)))))).....((.(((......)))))................. ( -21.50, z-score = -0.54, R) >consensus _GGAAUUAGACA__AACAAACAAUAAAAUUUAUGGCAAGUGUCGCAUUUUGUCAUCAAGC__CGACAAAAACAACUGCCAGGAAAAAAAAUAAAGCA____________________ ...............................((((((((........)))))))).............................................................. ( -5.99 = -5.89 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:26 2011