| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,813,422 – 18,813,516 |
| Length | 94 |
| Max. P | 0.857150 |
| Location | 18,813,422 – 18,813,516 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.49 |
| Shannon entropy | 0.45010 |
| G+C content | 0.50357 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -15.67 |
| Energy contribution | -15.29 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18813422 94 - 21146708 ACACAGAGACGCAGAAGCUUGGA-----AAGUUGCAACUCCAAAUUAGGAGUUCAAUCGAGGGUU--ACACACACAGGCCGCGCACACUCGCGCACAAGUG .(((............(((((..-----..((((.((((((......))))))))))...(....--.).....))))).((((......))))....))) ( -24.40, z-score = -1.28, R) >droSim1.chr2R 17409781 85 - 19596830 --------ACCCAG-AGCUCGGA-----AAGUUGCAACUCCAAAUUAGGAGUUCAAUUGAGGGUU--ACACACAUAUGCCGCGCACACUCGUGCACAAGUG --------......-(((((...-----.(((((.((((((......)))))))))))..)))))--.....(((.((..((((......)))).)).))) ( -22.50, z-score = -1.20, R) >droSec1.super_9 2111888 85 - 3197100 --------GCCCAG-AGCUCGGA-----AAGUUGCAACUCCAAAUUAGGAGUUCAAUUGAGGGUU--ACACACAUAUGCUGCGCACACUCGUGCACAAGUG --------......-(((((...-----.(((((.((((((......)))))))))))..)))))--.....(((.((.(((((......))))))).))) ( -24.70, z-score = -1.45, R) >droYak2.chr2R 18778851 96 - 21139217 ACCCAGAGACUCUGAAUCUCGGA-----AAGUUGCAACUCCAAAUUAGGAGUUCAAUUGAGGGUUACACACACACAGGCCGCACACACUCGCGCACAAGUG ((((.((((.......))))...-----.(((((.((((((......)))))))))))..))))......(((....((.((........))))....))) ( -24.70, z-score = -1.56, R) >droEre2.scaffold_4845 20176650 94 - 22589142 ACUUAGAGACUCAGAAGCUCGGA-----AAGUUGCAACUCCAAAUUAGGAGUUCAAUUGAGGGUU--ACACACACUGGCCGCGCACACUCGCGCACAAGUG .............(.(((((...-----.(((((.((((((......)))))))))))..)))))--.)...((((....((((......))))...)))) ( -26.50, z-score = -1.55, R) >droAna3.scaffold_13266 15155171 84 - 19884421 UCUCGGCGUCGGGAAGGCUUUCAAUUACAAGUUGCAACUCCAAAUUAGGAGUUCAAUGGGGGGCU--ACGCACACA-GCUGCAAGUG-------------- (((((....))))).((((..(........((((.((((((......)))))))))).)..))))--..(((....-..))).....-------------- ( -24.30, z-score = -1.65, R) >consensus AC_CAGAGACCCAGAAGCUCGGA_____AAGUUGCAACUCCAAAUUAGGAGUUCAAUUGAGGGUU__ACACACACAGGCCGCGCACACUCGCGCACAAGUG .................((((.........((((.((((((......))))))))))))))(((.............)))((((......))))....... (-15.67 = -15.29 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:30 2011