| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,797,702 – 18,797,799 |
| Length | 97 |
| Max. P | 0.892046 |
| Location | 18,797,702 – 18,797,799 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 63.28 |
| Shannon entropy | 0.68325 |
| G+C content | 0.44599 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.70 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.892046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18797702 97 + 21146708 CUUAUGCAACAGACGAGUAUGAAAUUUGUCUGGGCAGGCU-------CACAAAG---AUGUU--GGGGCUGGGUCUAUGCACAUAUGGGUGUAUAUAUCUACC-UGAUGC .....(((.(((((((((.....)))))))))..((((((-------(.(((..---...))--)))))(((((.(((((((......))))))).))))).)-)).))) ( -30.20, z-score = -1.95, R) >droSim1.chr2R 17394080 97 + 19596830 CUUAUGCAACAGACGAGUAUGAAAUUUGUCUGGGCAGGCU-------CUCAAAG---AUGUU--GGGGCUGGGUCUAUGCACAUAUGGGUGCAUAUAUCUACC-UGGUGC .....(((.(((((((((.....)))))))))..((((.(-------(((((..---...))--)))).(((((.(((((((......))))))).)))))))-)).))) ( -32.40, z-score = -2.24, R) >droSec1.super_9 2096138 97 + 3197100 CUUAUGCAACAGACGAGUAUGAAAUUUGUCUGGGCAGGCU-------CACAAAG---AUGUU--GGGGCUGGGUCUAUGCACAUAUGGGUGCAUAUAUCUAUC-UGGUGU ....(((..(((((((((.....))))))))).)))((((-------(.(((..---...))--))))))((((.(((((((......))))))).))))...-...... ( -31.50, z-score = -2.35, R) >droEre2.scaffold_4845 20162349 100 + 22589142 CUUAUGCAACAGACGAGUAUGAAUUUCGUCUGGGUAGGCUGUGGGCUCACAAAG---AUGUU--GGGGCUGGAUCUAUGCACAUAUGACUGUAUGCA----CC-UGGUGC .....(((.((((((((.......))))))))..((((.(((.(((((.(((..---...))--))))))......(((((........))))))))----))-)).))) ( -26.90, z-score = 0.21, R) >droAna3.scaffold_13266 15137194 89 + 19884421 GUUAUGCAACGGACGAGUAUGAGAUUCGUCUGGGCAGGUU-------UACAAAG---AUGUUUUGGGGCUGGGUAUUUAAAAA-AGAGAAGAAAACAUAC---------- ....(((..(((((((((.....))))))))).)))....-------.......---(((((((....((.............-)).....)))))))..---------- ( -17.22, z-score = -1.28, R) >droWil1.scaffold_180697 3618799 110 - 4168966 CUUAUGCAAUCUGUAUACAUAGCAUCUACCUACAUAUACAUACAUGACAAUAAGCAAACCUCUUGUAAUAUGCACCUCAAUGCUGCUGCUGCUGAUGUUGAUGAUGGCGC .....((....((((((..(((.......)))..))))))..(((.((((((((((.......(((.....))).......((....))))))..))))).).))))).. ( -15.80, z-score = 2.13, R) >consensus CUUAUGCAACAGACGAGUAUGAAAUUUGUCUGGGCAGGCU_______CACAAAG___AUGUU__GGGGCUGGGUCUAUGCACAUAUGGGUGCAUAUAUCUACC_UGGUGC ....(((..(((((((((.....))))))))).)))..................................((((.(((((((......))))))).)))).......... (-13.07 = -13.83 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:29 2011