| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,794,627 – 18,794,737 |
| Length | 110 |
| Max. P | 0.929917 |
| Location | 18,794,627 – 18,794,737 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.35 |
| Shannon entropy | 0.52390 |
| G+C content | 0.46971 |
| Mean single sequence MFE | -30.69 |
| Consensus MFE | -17.42 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18794627 110 - 21146708 AGUCGGUGGCUGCGGUUGCUGCGAUUGCGGCUGACUAAUUGACAUUUGCAUUGAGUUGAUUGCUCUUC--UAAUUAUCGGAACCGAUGUGGAUGUCAACUCCAUUGGAUGGC (((((((.(((((((...)))))...)).)))))))..((((((((..(...((((.....))))...--.....((((....)))))..))))))))..((((...)))). ( -37.40, z-score = -2.50, R) >droAna3.scaffold_13266 15134363 99 - 19884421 --------ACCUCCGUAAGUUCAACUCCGACUGACUAAUUGACAUUUACACUGCACUGA-UGCUCGUCCAUAAUUAUCGGAACCGAUGUUU-UGUCAACCCCAGUUGAU--- --------...................((((((.....((((((...((...(((....-)))............((((....))))))..-))))))...))))))..--- ( -18.00, z-score = -0.97, R) >droEre2.scaffold_4845 20159142 106 - 22589142 AGUCGGUGGCUGCGGUUGUUGCGAUUGCGGCUGACUAAUUGACAUUUGCAUUGAGCGGAUUGCUCUUC--UAAUUAUCGGAACCGAUGUGG-UAUCAACUCCAUUGGAU--- .(((((((((((((((((...))))))))))).....)))))).........((((.....))))...--............((((((..(-(....))..))))))..--- ( -31.60, z-score = -1.02, R) >droYak2.chr2R 18759728 109 - 21139217 AGUCGGUGGCUGCGGUUGCUGCGUUUGCGGCUGACUAAUUGACAUUUGCAUUGAGCUGAUUGCUCUUC--UAAUUAUUGGAACCGAUGUUG-UGUCAACUCCAUUGGAUGGC (((((((.(((((((...)))))...)).)))))))..(((((((..(((((((((.....))))(((--((.....)))))..))))).)-))))))..((((...)))). ( -35.30, z-score = -2.05, R) >droSec1.super_9 2093112 109 - 3197100 AGUCGGUGGCUGCGGUUGCUGCGAUUGCGGCUGACUAAUUGACAUUUGCAUUGAGCUGAUUGCUCUUC--UAAUUAUCGGAACCGAUGUUG-UGUCAACUCCAUUGGAUGGC (((((((.(((((((...)))))...)).)))))))..(((((((..((...((((.....))))...--.....((((....)))))).)-))))))..((((...)))). ( -34.40, z-score = -1.53, R) >droSim1.chr2R 17391057 109 - 19596830 AGUCGGUGGCUGCGGUUGCUGCGAUUGCGGCUGACUAAUUGACAUUUGCAUUGAGCUGAUUGCUCUUC--UAAUUAUCGGAACCGAUGUUG-UGUCAACUCCAUUGGAUGGC (((((((.(((((((...)))))...)).)))))))..(((((((..((...((((.....))))...--.....((((....)))))).)-))))))..((((...)))). ( -34.40, z-score = -1.53, R) >droGri2.scaffold_15245 5644024 91 - 18325388 --------AGUCCAG-AGUCGAAGUGUGGUUUCGCUAAUUAGAGUCUGCAUUUAGUGG------------CAGAUCUUCGAGCAGAUGCAAAGGUAAGCCGCAUUGAAAAGU --------.......-......((((((((((.(((..(..((((((((........)------------)))).)))..)((....))...)))))))))))))....... ( -23.70, z-score = -1.11, R) >consensus AGUCGGUGGCUGCGGUUGCUGCGAUUGCGGCUGACUAAUUGACAUUUGCAUUGAGCUGAUUGCUCUUC__UAAUUAUCGGAACCGAUGUUG_UGUCAACUCCAUUGGAUGGC .......((((((((((.....))))))))))......((((((...((((((..(((((...............)))))...))))))...)))))).............. (-17.42 = -18.37 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:28 2011