| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,792,174 – 18,792,274 |
| Length | 100 |
| Max. P | 0.603454 |
| Location | 18,792,174 – 18,792,274 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.00 |
| Shannon entropy | 0.35852 |
| G+C content | 0.28014 |
| Mean single sequence MFE | -19.02 |
| Consensus MFE | -9.39 |
| Energy contribution | -10.15 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18792174 100 + 21146708 AAAAUCACAUUUUUAGUCAAU----AAAAAUAAGUUGGAAUGUGUUAAUUCGUGCUAAAUUCACAGAAAUGUGGCACGAAAA-----UAAUUUCAU-UAAUUCGAAACAC ....((..(((((((.....)----))))))....((((((.((((..(((((((......((((....)))))))))))))-----)))))))).-......))..... ( -19.10, z-score = -2.26, R) >droSim1.chr2R 17388606 95 + 19596830 -------CAAAUCUAAUAAAUCU--AAAAAUAAGUUGGAAUGUGUUAAUCCGUGCUAAAUUCAUAGAAAUGUGGCACGAAAA-----UUAUUUCAU-UAAUUCGAAACAC -------....((((((......--........))))))..(((((....(((((((.(((......))).)))))))..((-----(((......-)))))...))))) ( -14.84, z-score = -1.57, R) >droSec1.super_9 2090736 95 + 3197100 -------CAAAUCUAAUAAAUCU--AAAAAUAAGUUGGAAUGUGUUAAUCCGUGCUAAAUUCAUAGAAAUGUGGCACGAAAA-----UUAUUUCAU-UAAUUCGAAACAC -------....((((((......--........))))))..(((((....(((((((.(((......))).)))))))..((-----(((......-)))))...))))) ( -14.84, z-score = -1.57, R) >droYak2.chr2R 18757166 108 + 21139217 UGUAUCACAUUUUUAGACGAUUUU-AAAAAUAAGUUGGAAUGUGUUAAU-CGUGCUAAAUGCAUAGAAAUGUGGCACGAAAACACAUUCAUUUUCUAUAAUUUCAAACUC .............((((((((((.-......))))))(((((((((..(-(((((((.((........)).)))))))).)))))))))....))))............. ( -26.50, z-score = -3.54, R) >droEre2.scaffold_4845 20156574 108 + 22589142 CAUAUCACACUUUUGGUCGUUUUUUAAAAAUAAGUUGGAAUGUGUUAAU-CGUGCUAAAUUCAUAGAAAUGUGACACGAAAAUUCAUUAAUUUCAU-UCACUUCCAACUC ................................((((((((.(((....(-((((......(((((....))))))))))(((((....)))))...-.))))))))))). ( -19.80, z-score = -1.71, R) >consensus ___AUCACAAUUUUAGUCAAUCU__AAAAAUAAGUUGGAAUGUGUUAAU_CGUGCUAAAUUCAUAGAAAUGUGGCACGAAAA_____UAAUUUCAU_UAAUUCGAAACAC ...................................(((((((........(((((((.(((......))).)))))))..........)))))))............... ( -9.39 = -10.15 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:27 2011