| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,784,894 – 18,784,952 |
| Length | 58 |
| Max. P | 0.603282 |
| Location | 18,784,894 – 18,784,952 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 92.40 |
| Shannon entropy | 0.14323 |
| G+C content | 0.46882 |
| Mean single sequence MFE | -12.59 |
| Consensus MFE | -10.39 |
| Energy contribution | -10.42 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18784894 58 - 21146708 UCUCCGCGCGGAACAAU-CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCAAU ..(((....))).....-........(((((.....)))))....(((......))).. ( -13.30, z-score = -1.26, R) >droAna3.scaffold_13266 15124549 57 - 19884421 --UCUCCGCAGAACAAUCCCCGAAAAGCAGCUGUCAGCUGCCAAACGAUAAUUUGCAAU --.....(((((...(((........(((((.....))))).....)))..)))))... ( -12.02, z-score = -2.18, R) >droEre2.scaffold_4845 20149096 56 - 22589142 --UCUCCGUGGAACAAU-CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCAAU --.....(.(((....)-))).....(((((.....)))))....(((......))).. ( -12.70, z-score = -1.92, R) >droYak2.chr2R 18749693 56 - 21139217 --UCUCCGCGGAACAAU-CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCAAU --.....(.(((....)-))).....(((((.....)))))....(((......))).. ( -12.70, z-score = -1.71, R) >droSec1.super_9 2083459 54 - 3197100 --UCUCCGCGGAACAAU-CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCA-- --.....(((((....)-))......(((((.....))))).............)).-- ( -12.10, z-score = -1.31, R) >droSim1.chr2R 17381350 56 - 19596830 --UCUCCGCGGAACAAU-CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCAAU --.....(.(((....)-))).....(((((.....)))))....(((......))).. ( -12.70, z-score = -1.71, R) >consensus __UCUCCGCGGAACAAU_CCCAAAAAGCAGCUGUCAGCUGCCAAAUGCUAAUAUGCAAU .......((((........)).....(((((.....))))).............))... (-10.39 = -10.42 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:24 2011