| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,724,790 – 18,724,880 |
| Length | 90 |
| Max. P | 0.532445 |
| Location | 18,724,790 – 18,724,880 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 68.43 |
| Shannon entropy | 0.59139 |
| G+C content | 0.36306 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -5.67 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18724790 90 + 21146708 -----CUUAUCA--CCUGACGUGUCGUAUCAGAUAAGCAACAUUUGGCUUAUC---GUCUAAUUCAAUUUGGAUUUAAAU-----CCACUCUAUGUUCGUGGUCU -----...((((--(..((((((..((....(((((((........)))))))---((((((......))))))......-----..))..)))))).))))).. ( -19.90, z-score = -2.29, R) >droSim1.chr2R 17320534 88 + 19596830 -----CUUAUCA--CCUGACG--UCGUAUCAGAUAAGCAAAAUUUGGCUUAUC---GGCUAAUUCAAUUUGGAUUUAAAU-----CCACUCUAUGUUCGUGUUCU -----.....((--(..((((--(.((....(((((((........)))))))---.))..........(((((....))-----)))....))))).))).... ( -16.50, z-score = -1.55, R) >droSec1.super_9 2025267 88 + 3197100 -----CUUAUCA--CCUGACA--UUGUAUCAGAUAAGCAAAAUUUGGCUUAUC---GGCUAAUUCAAUUUGGAUUUAAAU-----CCACUCGAUGUUCGUGUUCU -----.....((--(..((((--(((.....(((((((........)))))))---.............(((((....))-----)))..))))))).))).... ( -20.20, z-score = -2.62, R) >droYak2.chr2R 18690974 88 + 21139217 -----CUUAUCA--CUUGACG--UGGUAUCAGAUAAGCCAAAUUUGGCUUAUC---GACCAAUUCAAUUUGGAUUUAAAU-----CCAUUCCAUGUUCGUGGGCU -----.......--.((((..--((((....(((((((((....)))))))))---.))))..))))..(((((....))-----))).(((((....))))).. ( -28.50, z-score = -4.32, R) >droEre2.scaffold_4845 20090341 87 + 22589142 -----CUUAUCA--CUUGA-G--UUGUAUCAGAUAAGCCGAAUUCGGCUUAUC---GGCUAAUUCAAUUUGGAUUUAAAU-----UCAUUCCAUGUUCGUGGGCU -----....(((--(((((-(--((((....(((((((((....)))))))))---.)).)))))))..((((.......-----....)))).....))))... ( -26.80, z-score = -3.92, R) >droAna3.scaffold_13266 15065112 90 + 19884421 -----CAUAUCA--UAUGAUG--GCUUAUUAGAUUAGACCAAUAACGCUUAUC---GGCUCAGCGA--UUGGAUUUAAAUGACCAUAAUUCUAU-UCCCUGCAUU -----.......--....(((--(.(((((....(((((((((..((((....---.....)))))--)))).)))))))))))))........-.......... ( -12.50, z-score = 0.68, R) >droMoj3.scaffold_6496 9436033 98 + 26866924 UUUGACGCAUUGGUUAUGUCAUUUAGCAAAAGUUCAGUCAAGUUCUAUUUCACAAAGGGUAAUUCACUUUUAAUUUAUAG---CCCUUAUCAAGGCAGAUA---- ((((((..(((.((((.......))))...)))...)))))).(((.......(((((........)))))........(---((........))))))..---- ( -13.30, z-score = 0.07, R) >consensus _____CUUAUCA__CCUGACG__UCGUAUCAGAUAAGCCAAAUUUGGCUUAUC___GGCUAAUUCAAUUUGGAUUUAAAU_____CCACUCUAUGUUCGUGGUCU ...............................(((((((........))))))).................................................... ( -5.67 = -5.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:16 2011