| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,682,695 – 18,682,808 |
| Length | 113 |
| Max. P | 0.556132 |
| Location | 18,682,695 – 18,682,808 |
|---|---|
| Length | 113 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Shannon entropy | 0.42247 |
| G+C content | 0.32540 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -13.92 |
| Energy contribution | -13.77 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556132 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 18682695 113 - 21146708 AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCCAGA--- .......((..(((((.(((((((((((((....(....)...)))))))))))))))))).(......--).))......((((...(((.(........).)))..))))...--- ( -22.60, z-score = -1.22, R) >droSim1.chr2R 17278498 113 - 19596830 AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCAAGA--- .......((..(((((.(((((((((((((....(....)...)))))))))))))))))).(......--).)).......(((...(((.(........).)))..)))....--- ( -19.10, z-score = -0.11, R) >droSec1.super_9 1984073 112 - 3197100 AAUUAAAGCGACUUAUU-AGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCAAGA--- .......((..(((((.-((((((((((((....(....)...)))))))))))).))))).(......--).)).......(((...(((.(........).)))..)))....--- ( -18.90, z-score = -0.02, R) >droYak2.chr2R 16149035 113 - 21139217 AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCCACA--- .......((..(((((.(((((((((((((....(....)...)))))))))))))))))).(......--).))......((((...(((.(........).)))..))))...--- ( -22.60, z-score = -1.16, R) >droEre2.scaffold_4845 20045837 113 - 22589142 AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCAAGA--- .......((..(((((.(((((((((((((....(....)...)))))))))))))))))).(......--).)).......(((...(((.(........).)))..)))....--- ( -19.10, z-score = -0.11, R) >droAna3.scaffold_13266 15027576 116 - 19884421 AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGGAUAGGUGGUAGGGGCUGUAAGGGCUGCAAGGGAUAGAAGG .......((.((((((((((((((((((((....(....)...)))))))))))))....(.((.....--.)))..))))))).)).(.((((.....)))).)............. ( -22.30, z-score = -0.42, R) >dp4.chr3 4163416 115 - 19779522 AAUUAAAGCAACUUAUUAAAUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAUGAGAGCCAGGGAGGAUGCGAGAGACAGAACUAAAACAACGGCCACA--- ...........(((((.(((((((((((((....(....)...))))))))))))))))))..........(.(((..(.((..(((....).))...))....)...))))...--- ( -20.60, z-score = -1.80, R) >droPer1.super_2 4350730 115 - 9036312 AAUUAAAGCAACUUAUUAAAUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAUGAGAGCCAGGGAGGAUGCGAGAGACAGAACUAAAACAACGGACACA--- .......(((.(((((.(((((((((((((....(....)...)))))))))))))))))).............((.....)).)))............................--- ( -17.80, z-score = -1.35, R) >droWil1.scaffold_180700 2773995 112 + 6630534 AAUUAAAGCAACUUAUUAAGUAUGUAAAUUUUCACAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGCAGAGUAAGGGGUGAAG---AGAGGUGAAGAAGGGUACCAAAA- .......((..(((((((((((((((((((.(((....)))..)))))))))))))....(.((.....--.)))..))))))..))....---...((((........))))....- ( -20.20, z-score = -1.95, R) >droGri2.scaffold_15245 1018295 91 + 18325388 AAUUAAAGCAACUUAUUAAGUAUGCAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU--GAGGGCCAUA-ACAGCAACAACA------------------------ .......((..(((((.(((((((((((((....(....)...))))))))))))))))))......((--(.....))).-...)).......------------------------ ( -18.10, z-score = -1.94, R) >consensus AAUUAAAGCGACUUAUUAAGUAUGUAAAUUUCCGCAAAUGAUUAAUUUGCAUAUUUAUGAGACUAAAAU__GAGCAGGAUAGGGUGUGUGUCUGACAACUAAAACAAAGCCCAGA___ ...........(((((.(((((((((((((....(....)...))))))))))))))))))......................................................... (-13.92 = -13.77 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:08 2011