| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,682,209 – 18,682,342 |
| Length | 133 |
| Max. P | 0.509066 |
| Location | 18,682,209 – 18,682,342 |
|---|---|
| Length | 133 |
| Sequences | 5 |
| Columns | 137 |
| Reading direction | reverse |
| Mean pairwise identity | 88.71 |
| Shannon entropy | 0.19574 |
| G+C content | 0.34931 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -22.70 |
| Energy contribution | -21.74 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18682209 133 - 21146708 GAGAAU---CAGGCAAUUAAUUCCACA-CCUCUAGCCCUAAAGAAGAUUGUAAAAUCAAUAAUUUGAUUGGGUUGCGAAAAAUGGAAACAGUUAAUUAUGGCACUUUAGAACACCUGAACUAAAAUGCUUUCGAAUU ((((..---.....(((((((((((..-..((((((((...(((..((((......))))..)))....)))))).))....))))....)))))))...(((.(((((..(....)..))))).)))))))..... ( -23.40, z-score = -0.34, R) >droSim1.chr2R 17278012 132 - 19596830 GAGAAUGCCGAGGCAAUUAAUUCCACA-CCUCUAGCCCUAAAGUAGAUUGUAAAAUCAAUAAUUUGAUUGGGUUGCGAAAAAUGGGAAC----AAUUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUU ((((.(((....))).....(((((..-..((((((((.....((((((((.......))))))))...)))))).))....)))))..----.......(((((((((..(....)..)))))))))))))..... ( -31.90, z-score = -2.14, R) >droSec1.super_9 1983583 136 - 3197100 GAGAAUGCCGAGGCAAUUAAUUCCACA-CCUCUAGCCCUAAAGUAGAUUGUAAAAUCAAUAAUUUGAUUGGGUUGCGAAAAAUGGGAACAAUUAAUUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUU ((((.(((....))).....(((((..-..((((((((.....((((((((.......))))))))...)))))).))....))))).............(((((((((..(....)..)))))))))))))..... ( -31.90, z-score = -2.13, R) >droYak2.chr2R 16148592 133 - 21139217 GAGAAU---CAGGCAAUUAAUUCCGCA-CCUCUAGCUUUAUGGAAAAUUGUAAAAUCAAUAAUUUGACUGCGUUACAAAAAGUGGAAACAAUUAAUUAUGGCACUUUCGAACACCUGAACUAAAGUGCUUUCGAAUU ((((..---.....((((((((((((.-..((((......))))...((((((..((((....)))).....))))))...)))))....)))))))...(((((((.(..(....)..).)))))))))))..... ( -23.70, z-score = -0.67, R) >droEre2.scaffold_4845 20045324 133 - 22589142 GAGAAU---CAGGCAAUUAAUUCCACAGCUCCUAGCUUUAAAGAAAAUUGUAAAAUCAAUAAUUUGAUCGGGUUAC-AAAACUGGAAGCAAUUAAUUAUGGCACUUUAGAGCACCUGCACUAAAGUGCUUUCAAAUU ((((..---.....((((..(((((.(((.....)))..........((((((.(((((....)))))....))))-))...)))))..)))).......(((((((((.((....)).)))))))))))))..... ( -31.20, z-score = -2.37, R) >consensus GAGAAU___CAGGCAAUUAAUUCCACA_CCUCUAGCCCUAAAGAAGAUUGUAAAAUCAAUAAUUUGAUUGGGUUGCGAAAAAUGGAAACAAUUAAUUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUU ((((................(((((.......((((((...(..(((((((.......)))))))..).)))))).......))))).............(((((((((..........)))))))))))))..... (-22.70 = -21.74 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:07 2011