| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,683,486 – 3,683,538 |
| Length | 52 |
| Max. P | 0.736369 |
| Location | 3,683,486 – 3,683,538 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 73.84 |
| Shannon entropy | 0.49844 |
| G+C content | 0.59306 |
| Mean single sequence MFE | -12.39 |
| Consensus MFE | -8.92 |
| Energy contribution | -9.66 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3683486 52 + 23011544 ----CUCCACCGUUAUCGCCGCCAUCCACCGCCCAAUUUAGGCGCUGAUUACGGGC ----.....((((.((((.((((.................)))).)))).)))).. ( -15.23, z-score = -1.72, R) >droGri2.scaffold_15126 4341490 52 + 8399593 ----CCCCCUUGCCAUCGUUUGCAGCCUCUUACCAAUUUAGGCGCUGAUUACAGGC ----.......(((...((...((((.(((.........))).))))...)).))) ( -9.80, z-score = -0.19, R) >droVir3.scaffold_12963 5155938 50 - 20206255 ----ACCCCCUGCC--CCUUGCCAGCCUCUUACCAAUUUAGGCGCUGAUUACAGGC ----....((((..--....((..((((...........))))))......)))). ( -9.00, z-score = -0.12, R) >droAna3.scaffold_12916 5740123 56 + 16180835 CUUUUCGUCCUGUCCCUCCACCCAAUCCCCCCCCAAUUUAGGCGCUGAUUACAGGG ........(((((..........((((..(((........)).)..))))))))). ( -6.60, z-score = 0.65, R) >droEre2.scaffold_4929 3720153 52 + 26641161 ----CUCCGCCGUUAUCACCGCCAUGCACCGCCCAAUUUAGGCGCUGAUUACGGGC ----.....((((.((((.((((.................)))).)))).)))).. ( -15.63, z-score = -1.24, R) >droSec1.super_5 1779084 52 + 5866729 ----CUCCACCGUUAUCGCCGCCAUCCACCGGCCAAUUUAGGCGCUGAUUACGGGC ----.....((((.((((.((((.................)))).)))).)))).. ( -15.23, z-score = -1.03, R) >droSim1.chr2L 3640932 52 + 22036055 ----CUCCACCGUUAUCGCCGCCAUCCACCGCCCAAUUUAGGCGCUGAUUACGGGC ----.....((((.((((.((((.................)))).)))).)))).. ( -15.23, z-score = -1.72, R) >consensus ____CUCCACCGUUAUCGCCGCCAUCCACCGCCCAAUUUAGGCGCUGAUUACGGGC .........((((.((((.((((.................)))).)))).)))).. ( -8.92 = -9.66 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:24 2011