| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,682,115 – 18,682,166 |
| Length | 51 |
| Max. P | 0.991318 |
| Location | 18,682,115 – 18,682,166 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 75.41 |
| Shannon entropy | 0.46319 |
| G+C content | 0.46676 |
| Mean single sequence MFE | -12.27 |
| Consensus MFE | -6.26 |
| Energy contribution | -7.43 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.991318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18682115 51 - 21146708 GCGGACAGUUUUAGUUUUUCACCCCGUGUACUUCGCUAUUUUGUCCCCAAC---- (.((((((...((((....(((...)))......))))..)))))).)...---- ( -10.50, z-score = -2.76, R) >droEre2.scaffold_4845 20045231 51 - 22589142 GGGGACAGUUUUAGUUUUUCAACCCGUGUACUUUGCUAUUUCGGCCCCAAC---- ((((...(...((((....((.....))......))))...)..))))...---- ( -10.10, z-score = -0.30, R) >droYak2.chr2R 16148503 50 - 21139217 GGGGACAGUUUUAGUUUUUCACCCCGUGUACUUCGCUCUUU-GUCCCCAAC---- ((((((((....(((....(((...))).))).......))-))))))...---- ( -15.10, z-score = -3.11, R) >droSec1.super_9 1983491 51 - 3197100 GCGGACAGUUUUAGUUUUUCACCCCGUGUACUUCGCUAUUUUGUCCGCAAC---- ((((((((...((((....(((...)))......))))..))))))))...---- ( -16.80, z-score = -4.92, R) >droSim1.chr2R 17277919 51 - 19596830 GCGGACAGUUUUAGUUUUUCACCCCGUGUACUUCGCUAUUUUGUCCGCAAC---- ((((((((...((((....(((...)))......))))..))))))))...---- ( -16.80, z-score = -4.92, R) >droMoj3.scaffold_6496 9359306 55 - 26866924 GCGCAUAGUUUAUAUUUGCCAUGUUCUGUCUCUAUCUAACUGACUCUCCCUGUCU (.((((.((........)).)))).)...............(((.......))). ( -4.30, z-score = -0.23, R) >consensus GCGGACAGUUUUAGUUUUUCACCCCGUGUACUUCGCUAUUUUGUCCCCAAC____ ((((((.....((((....((.....))......))))....))))))....... ( -6.26 = -7.43 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:06 2011