| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,641,112 – 18,641,172 |
| Length | 60 |
| Max. P | 0.826451 |
| Location | 18,641,112 – 18,641,172 |
|---|---|
| Length | 60 |
| Sequences | 9 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.38208 |
| G+C content | 0.48824 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -11.19 |
| Energy contribution | -12.39 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18641112 60 + 21146708 GUCGAUUAUCGCAAGCAUUUGGCGAACGGCAAACUUUUGCGCUUGUCGGCGUUAACAAGC ((((((...((((((..((((.(....).))))..))))))...)))))).......... ( -19.50, z-score = -1.75, R) >droWil1.scaffold_180700 2704599 53 - 6630534 GUCGAUUAUGGGGGUAA------AAACCCUAGAAAUGGGCAAAC-UUUACGUUAACAAGG (((.(((.(((((....------...)))))..))).)))....-............... ( -12.40, z-score = -1.71, R) >droPer1.super_2 4306166 60 + 9036312 GUCGAUUAUCGCCAGCAUUUGGCGAACGGCAAACUUGGGCGCUUGUCGGCAUUAACAAGC ((((((...((((....((((.(....).))))....))))...)))))).......... ( -19.50, z-score = -1.76, R) >dp4.chr3 4119109 59 + 19779522 GUCGAUUAUCGCUAGCAUUUGGCGAACGGCAAACUUGGGCGCUUGUCGGCAUUAACAAG- ((((((...((((....((((.(....).))))....))))...)))))).........- ( -17.60, z-score = -1.84, R) >droAna3.scaffold_13266 14981723 51 + 19884421 GUCGAUUAUCGCAAG---------AACGGCAAACUUUUUCGCUUGUCGGCGUUAACAAGC ((((....((....)---------).))))..........((((((........)))))) ( -11.70, z-score = -0.81, R) >droEre2.scaffold_4845 20002636 60 + 22589142 GUCGAUUAUCGCAAGCAUUUGGCGAACGGCAAACUUUUGCGCUUGUCGGCGUUAACAAGC ((((((...((((((..((((.(....).))))..))))))...)))))).......... ( -19.50, z-score = -1.75, R) >droYak2.chr2R 16106896 60 + 21139217 GUCGAUUAUCGCAAGCAUUUGGCGAAUGGCAAACUUUUGCGCUUGUCGGCGUUAACAAGC ((((((...((((((..((((.(....).))))..))))))...)))))).......... ( -18.60, z-score = -1.52, R) >droSec1.super_9 1942392 60 + 3197100 GUCGAUUAUCGCAAGCAUUUGGCGAACGGCAAACUUUUGCGCUUGUCGACGUUAACAAGC ((((((...((((((..((((.(....).))))..))))))...)))))).......... ( -20.10, z-score = -2.32, R) >droSim1.chr2R 17236735 60 + 19596830 GUCGAUUAUCGCAAGCAUUUGGCGAACGGCAAACUUUUGCGCUUGUCGGCGUUAACAACC ((((((...((((((..((((.(....).))))..))))))...)))))).......... ( -19.50, z-score = -2.09, R) >consensus GUCGAUUAUCGCAAGCAUUUGGCGAACGGCAAACUUUUGCGCUUGUCGGCGUUAACAAGC ((((((...((((....((((.(....).))))....))))...)))))).......... (-11.19 = -12.39 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:44:03 2011