| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,565,897 – 18,566,010 |
| Length | 113 |
| Max. P | 0.839767 |
| Location | 18,565,897 – 18,566,010 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 69.99 |
| Shannon entropy | 0.66579 |
| G+C content | 0.51549 |
| Mean single sequence MFE | -36.34 |
| Consensus MFE | -15.99 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18565897 113 + 21146708 UACUUUAUGGUGCGUCCGCCACCAAAAUGUUCCAUAUAAAUGUGGCCCAAUGCGGCAUUGGCAACGAAUUUCCAACUUGCUGGCGCCGAUCGCCCUGGCAAGAAUCGAGAAAA .......((.(((((..(((((....((((...))))....)))))...))))).))(((....))).((((...((((((((((.....))))..))))))....))))... ( -29.50, z-score = 0.24, R) >droEre2.scaffold_4845 19925631 113 + 22589142 UACUUUAUGGUGCGUCCGCCACCAAAAUGUUUCGUAUAAAUGCUGCCCCAUGCGGCAUUGGCAACGAAUUCCCAACUUGCUGGCGCCGAUCGCCCUGGCAAGAAUCGAGAAAA .......(((((.(....))))))......(((((...((((((((.....))))))))....))))).......((((((((((.....))))..))))))........... ( -34.10, z-score = -1.30, R) >droYak2.chr2R 16030926 113 + 21139217 UACUUUAUGGUGCGGCCACCACCAAAAUGUUUCGUAUAAAUGCGGCCCAAUGCGGCAUUGCCAACGAAUACCCAACUUGCUGGCGCCGAUCGCCCCGGCAAGAAUCGUGAAAA .......(((((.(....))))))......(((((...(((((.((.....)).)))))....))))).......((((((((.((.....)).))))))))........... ( -34.40, z-score = -0.90, R) >droSec1.super_9 1868199 113 + 3197100 UACUUUAUGGUGCGUCCGCCACCAAAAUGUUCCGUAUAAAUGUGGCUGAAUGCGGCAUUGGCAACGAAUUCCCAACUUGCUGGCGCCGAUCGCCCCGGCAAGAAUCGAGAAAA .......(((((.(....)))))).....((((((...(((((.((.....)).))))).)).............((((((((.((.....)).))))))))....).))).. ( -32.20, z-score = -0.26, R) >droSim1.chr2R 17159881 113 + 19596830 UACUUUAUGGUGCGUCCGCCACCAAAAUGUUCCGUAUAAAUGUGGCUGAAUGCGGCAUUGGCAACGAAUUCCCAACUUGCUGGCGCCGAUCGCCCCGGCAAGAAUCGAGAAAA .......(((((.(....)))))).....((((((...(((((.((.....)).))))).)).............((((((((.((.....)).))))))))....).))).. ( -32.20, z-score = -0.26, R) >dp4.chr3 4045745 113 + 19779522 UACUUUAUGGCGCGUCCGCCACCAAAAUGGACAGGGUAAAGCCAAGCACGGCAGCCAUUGGCAGCAAACUGUCGACUUUCUGGGGCGAUUCGCCCGAGCAAGUUUUCAAUUGU .......(((((....)))))........(((((.((...(((......))).(((...))).))...)))))(((((.((.(((((...))))).)).)))))......... ( -37.70, z-score = -1.08, R) >droAna3.scaffold_13266 8992006 113 - 19884421 UACUUUAUGGCGCGUCCGCCACCAAAAUGGCCCGGAUAAAUCUGCUCCGUACGGGCAUUGGCAACGAGGUCUGUACUUGCUGGGGCCAAUCGCCCCGCUAAGUAUCUGGAUAU .......(((((....)))))((.....)).(((((((.....((...((((((((.(((....))).)))))))).....(((((.....)))))))....))))))).... ( -44.40, z-score = -2.31, R) >droVir3.scaffold_12875 13775586 113 + 20611582 CACUUUAUGGCGCGUACGCCACCAAAAUGUUUCAGCUUGAUGGGCGCAUGGCGUGCUGUGGCGCAAAACUCGCUACUUGCUGGCACGCGGCGUCCCAGCAAGUAUUCAAUUUU .......(((((....))))).............(((((.(((((((...(((((((((((((.......)))))).....))))))).))).)))).))))).......... ( -43.30, z-score = -1.60, R) >droMoj3.scaffold_6496 9188706 113 + 26866924 UACUUUAUGGCGCGCACGCCACCAAAAUGUUUCAACUUGAUGGGUGCACAGCGUGCAUUGGCAUAAAACUCGCUACUUGCUGGCACGACGCGUCCCAUCAAGUAUGGCAUUAA .......(((((....)))))....((((((...(((((((((((((....(((((...((((..............)))).)))))..))).))))))))))..)))))).. ( -42.34, z-score = -3.15, R) >droGri2.scaffold_15245 856571 113 - 18325388 UACUUUAUGGCGCGUACGCCACCAAAAUGUUCCCAGUUGAUGGCCGCAUAGCGUAGCGUUGUAUUUAACUCGCUACUUGCUGGCACGCAUCGGCCCAGCAAGUAUUUGGUUUU ........((((....))))((((((((((..(((.....)))..))))((((....((((....)))).))))(((((((((..((...))..))))))))).))))))... ( -36.80, z-score = -1.27, R) >droWil1.scaffold_180700 2582095 113 - 6630534 CACUUUAUAGGGCGAACGCCACCAAAAUGCGCCGCAUUAAACGAACAGGGGCGAGCAAUGGCAACGAAUUCGAAACUUACUGGUUCGGGACGCACGAGUAAGUUUCGUAAAAA ..........(((....))).(((.....((((.(............).)))).....))).........(((((((((((.((.((...)).)).)))))))))))...... ( -31.50, z-score = -1.42, R) >droPer1.super_2 4231744 113 + 9036312 UACUUUAUGGCGCGUCCGCCACCAAAAUGGACAGGGUAAAGCCAAGCACGGCAGCCAUUGGCAGCAAACUGUCGACUUUCUGGGGCGAUUCGCCCGAGCAAGUUUUCAAUUGU .......(((((....)))))........(((((.((...(((......))).(((...))).))...)))))(((((.((.(((((...))))).)).)))))......... ( -37.70, z-score = -1.08, R) >consensus UACUUUAUGGCGCGUCCGCCACCAAAAUGUUCCGUAUAAAUGCGGCCAAAGCCGGCAUUGGCAACGAAUUCCCAACUUGCUGGCGCCGAUCGCCCCAGCAAGUAUCGAGAAAA .......(((((....)))))......................................................((((((((.((.....)).))))))))........... (-15.99 = -15.88 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:56 2011