| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,561,959 – 18,562,058 |
| Length | 99 |
| Max. P | 0.803409 |
| Location | 18,561,959 – 18,562,058 |
|---|---|
| Length | 99 |
| Sequences | 9 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.25 |
| Shannon entropy | 0.62475 |
| G+C content | 0.40886 |
| Mean single sequence MFE | -17.99 |
| Consensus MFE | -7.92 |
| Energy contribution | -8.59 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803409 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 18561959 99 - 21146708 CAGCAGC--AAGGAGUUUUUAACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCCUAUUUUUUUCUCGCUCCUUCGACCAACGAACGAG-AAUUUCCCACUAC ..(((((--(.((((...........))))...))))))......................((((((....((((.....))))))))-))........... ( -20.00, z-score = -2.11, R) >droYak2.chr2R 16026353 95 - 21139217 CAGCAGC--AAGGAGUUUUUAACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCU--CUUUUUUCUCGCUCCUCCGAGCAA--AACGAG-AAUUUCCCACUAC ..(((((--(.((((...........))))...))))))......((..((.((--(.((((.((((......)))).))--)).)))-))..))....... ( -21.70, z-score = -2.06, R) >droEre2.scaffold_4845 19921622 97 - 22589142 CAGCAGC--AAGGAGUUUUUAACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCU-GUUUUCCUCUCGCUCCUGCGAGCAA--AACGAGCAUUUUCCCACUAC ..(((((--(.((((...........))))...))))))......((...((((-(((((...(((((....))))).))--))).))))...))....... ( -27.70, z-score = -3.10, R) >droSec1.super_9 1864312 93 - 3197100 CAGCAGC--AAGGAGUUUUU-ACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCC---UUUUUUCUCGCUCCUUCGAGCAA--AACGAG-AAUUUCCCACUAC ..(((((--(.((((.....-.....))))...))))))...............---....(((((((((....))))..--...)))-))........... ( -19.80, z-score = -1.58, R) >droSim1.chr2R 17155988 93 - 19596830 CAGCAGC--AAGGAGUUUUU-ACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCC---UUUUUUCUCGCUCCUUCGAGCAA--AACGAG-AAUUUUCCACUAC ..(((((--(.((((.....-.....))))...))))))...............---....(((((((((....))))..--...)))-))........... ( -19.80, z-score = -1.49, R) >droWil1.scaffold_180700 2573751 80 + 6630534 AAGAAGC--AA--AGUUUA--ACAUUUUCCAAAUGCUGCGAAUUU--UCUUUCU---UUCUUUCUUAUUUUUUUACGCAA-AAGCCAA-CUAC--------- ((((((.--((--((....--.....(((((.....)).)))...--.....))---)).))))))..........((..-..))...-....--------- ( -6.63, z-score = 0.65, R) >dp4.chr3 4041722 88 - 19779522 CGGCCGC--AAGGAGUUUA--GCAUUUUCCAAUUGCUGCAACUUU--UUUAGCU------ACUGCCGCUUUUCUAGAGAA-AAACCAA-AUUUCCCAACUAC ((((.((--((((((((((--(((.........))))).))))))--))..)).------...)))).(((((....)))-)).....-............. ( -17.20, z-score = -0.78, R) >droPer1.super_2 4227752 88 - 9036312 CGGCCGC--AAGGAGUUUA--GCACUUUCCAAUUGCUGCAACUUU--UUUAGCU------ACUGCCGCUUUUCUAGAGAA-AAACCAA-AUUUCCCAACUAC ((((.((--((((((((((--(((.........))))).))))))--))..)).------...)))).(((((....)))-)).....-............. ( -16.30, z-score = -0.41, R) >droVir3.scaffold_12875 13771838 76 - 20611582 --GCAGCCAAAGGAGUCUCUAACAUUUUCGAAAUGCUGCACAUUU-UUGUUGCU-----GACUACGACACAAAUACACAC-ACAC----------------- --(((((....((((..........)))).....)))))..((((-.(((((..-----.....))))).))))......-....----------------- ( -12.80, z-score = -0.92, R) >consensus CAGCAGC__AAGGAGUUUUU_ACAUUUUCCAAAUGCUGCAACGUUGAUUUUGCU___UUUUUUCUCGCUCCUUCGAGCAA__AACGAG_AAUUUCCCACUAC ..(((((....((((...........))))....)))))............................................................... ( -7.92 = -8.59 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:55 2011