| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,671,347 – 3,671,449 |
| Length | 102 |
| Max. P | 0.542638 |
| Location | 3,671,347 – 3,671,449 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 70.59 |
| Shannon entropy | 0.60981 |
| G+C content | 0.45154 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3671347 102 - 23011544 -AGCCUCCUUUUCGGCCACGCCCCCC------------UUUCGCUCGCCGAG-GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC -.(((((((..(((((...((.....------------....))..))))))-)).))))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -28.40, z-score = -1.83, R) >droSim1.chr2L 3625856 103 - 22036055 CGCCCUCCUUUUCGGCCACGCCCCCC------------GUUCGCUCGCCGAG-GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC .(((.((((..(((((...((.....------------....))..))))))-))).)))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -29.10, z-score = -1.76, R) >droSec1.super_5 1766940 103 - 5866729 CGCCCUCCUUUUCGGCCACGCCCCCU------------GUUCGCUCGCCGAG-GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC .(((.((((..(((((...((.....------------....))..))))))-))).)))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -29.10, z-score = -1.78, R) >droYak2.chr2L 3664616 103 - 22324452 CGCCUUCCUUUUCGGCCACGCCCCCU------------UUCCACUCGCCGGG-GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC .((((((((..(((((..........------------........))))))-)))))))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -30.47, z-score = -1.90, R) >droEre2.scaffold_4929 3707867 114 - 26641161 CGCCCUUCUUUUCGGCCACGCCCCCUCCCCCUUCCACAUUUCGCACGCCG-G-GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC .(((.((((..(((((...((.....................))..))))-)-)))))))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -24.30, z-score = 0.17, R) >droAna3.scaffold_12916 5727722 101 - 16180835 CCCAGCCCCACUUGGCAGCUGCC---------------ACGCCCCUCUCCUGGGCCCAGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC ....(((......))).((((..---------------..((((.......)))).))))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -25.50, z-score = -1.16, R) >droPer1.super_1 3730900 95 + 10282868 ------GUCCCCCAACCUCAUCU---------------CCGUGAGCCCUGGGCCCUGGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC ------((((((((..(((((..---------------..)))))...))))....))))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -24.00, z-score = -1.26, R) >dp4.chr4_group3 6631669 89 + 11692001 -----CGUCCCCCAGCCUCAUCU---------------CCGUGAG-------CCCUGGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC -----.....(((((.(((((..---------------..)))))-------..))))).((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -21.90, z-score = -2.04, R) >droWil1.scaffold_180708 9467920 87 - 12563649 -----------UGGGUUGCU------------------GGUGGUGGGUCAGGCGGGGCACAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC -----------.((..(.((------------------(((((..((((......))).)...)))))))...(((((.((((((((....)))).)))).))))).....)..)) ( -17.80, z-score = 0.37, R) >droVir3.scaffold_12963 15068821 93 - 20206255 ------AGGCCCAGGCUCAGUCG---------------CAGCCCGUCCUG--ACCAUGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC ------..(((..((.((((.((---------------.....))..)))--)))..)))((((((.(((((((((((((((.....))))).))))))).)))....)))))).. ( -21.00, z-score = -0.31, R) >droGri2.scaffold_15126 4074527 79 + 8399593 ----------------------G---------------GACCCAAUGUCCUGACCAAAGCAUUCCAUUUGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC ----------------------(---------------(((((((.....((((((((........))))((((((((((((.....))))).)))))))))))...)))).)))) ( -16.40, z-score = -1.39, R) >consensus _____UCCUUUUCGGCCACGCCC_______________GUUCGCGCGCCG_G_GGAAGGCAUUCCAUUAGAAUUGUGAGAAUUUGUAAUUUUGCAUAAUUGUUAUAUUUGGAGUCC ............................................................((((((.......(((((.((((((((....)))).)))).)))))..)))))).. (-10.20 = -10.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:24 2011