| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,538,920 – 18,539,021 |
| Length | 101 |
| Max. P | 0.902027 |
| Location | 18,538,920 – 18,539,021 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.12 |
| Shannon entropy | 0.16366 |
| G+C content | 0.44260 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -22.55 |
| Energy contribution | -24.30 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18538920 101 - 21146708 CCUUUGCCCAAUGGCAAGCAGAUGGAUACCACAUGCUUAACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAGAGAGAAUAAGAUGACCAUUACCU .(((((((((.((.....))..)))(((((..((((..((((((((((.....)))).)))))))))).)))))))))))..................... ( -24.70, z-score = -0.83, R) >droSec1.super_9 1840967 101 - 3197100 CCUUUGCCCAAUGGCAAUCAGCUGUAUACCACAUGCUUUACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAGAGAGUAUAAGAUCCCCAUUACCU ...(((((....)))))....(((((((((..((((...(((((((((.....)))).))))).)))).)))))))))....................... ( -29.40, z-score = -3.09, R) >droSim1.chr2R 17129120 92 - 19596830 CCUUGGCCCAAUGGCAAUCUGCUGUAUACCACAUGCUUUACUUGCUU---------GUCAAGUUGCAUCGGUAUGCAGAGAGUAUAAGAUCCCCAUUACCU ....((...(((((..((((.(((((((((..((((...(((((...---------..))))).)))).)))))))))........))))..))))).)). ( -28.20, z-score = -2.66, R) >consensus CCUUUGCCCAAUGGCAAUCAGCUGUAUACCACAUGCUUUACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAGAGAGUAUAAGAUCCCCAUUACCU ...(((((....)))))....(((((((((..((((...(((((((((.....)))).))))).)))).)))))))))....................... (-22.55 = -24.30 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:54 2011