| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,536,796 – 18,536,902 |
| Length | 106 |
| Max. P | 0.817163 |
| Location | 18,536,796 – 18,536,902 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 62.41 |
| Shannon entropy | 0.83592 |
| G+C content | 0.47528 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -10.97 |
| Energy contribution | -10.31 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18536796 106 - 21146708 -----AUCUACUGUCUGGGAUCUCGUUCCUUGCACCAACUA--UUCCAUUUCAUUUUCCAGCAUCUUUCCGCUCUUCUGGAUCUGCUGCGUGUGCACCUGGUGCGGUUGCAAU -----...........((((......))))((((((.....--...............(((((....((((......))))..))))).....((((...)))))).)))).. ( -22.80, z-score = -0.28, R) >droSec1.super_9 1836855 106 - 3197100 -----AUCUACUGUCUAGGAUCUCGAUCCUUGCACCAACUA--UUCCGUUACAUUUUCCAGCAUCUUUCCGCUCUUCUGGAUCUGCUGCGUGUGCACCUGGUGCGGGUGCAAU -----............((((....))))(((((((.....--.......((((....(((((....((((......))))..))))).))))((((...)))).))))))). ( -28.80, z-score = -1.72, R) >droSim1.chr2R 17125288 106 - 19596830 -----AUCUACUGUCUAGGAUCUCGAUCCUUGCACCAACUA--UUCCGUUACAUUUUCCAGCAUCUUUCCGCUCUUCUGAAUCUGCUGCGUGUGCACCUGGUGCGGAUGCAAU -----.......(((((((((....))))).((((((....--..((((..((..(((.(((........))).....)))..))..))).)......))))))))))..... ( -22.70, z-score = -0.59, R) >droYak2.chr2R 16001675 105 - 21139217 -----UCCCCCUGUCUGGGAUCUCAAUCAUUGCACCAACUA--ACCCAUU-CGUAUUGCAGCAUCUUUCCGCUCUUUUGGAUCUGCUGCGUGUGCACCUGGUGCGGUUGCAAU -----...(((.....))).........((((((((.....--.......-......((((((....((((......))))..))))))....((((...)))))).)))))) ( -29.60, z-score = -1.54, R) >droEre2.scaffold_4845 15171529 106 + 22589142 -----UGCCCCUGUCUAGGUUCUCGAUCUUUGCACCAACUA--AUCCAUCGUGUAUUCCAGCAUCUUUCCGCUCUUUUGGAUCUGCUGCGUGUGCACCUGGUGCGGAUGCAAU -----(((.(((....))).........(((((((((....--.......((((((.((((((....((((......))))..))))).).)))))).))))))))).))).. ( -28.50, z-score = -1.32, R) >droAna3.scaffold_13266 4382368 100 + 19884421 ---------GGGGUUUGGCAGAUAUCUUGACCCACUUCUCA---UACACC-CAUCUUGCAGCAUCUUCCCUCUGUUCUGGAUCUGCUGUGUGUGCACCUGGUGUGGGUGCAAC ---------.(((((.((.......)).)))))........---.((((.-......((((((...(((.........)))..))))))))))((((((.....))))))... ( -27.81, z-score = 0.57, R) >dp4.chr3 4020135 112 - 19779522 GCUCAUCAAACGGGCACAUAGAACAAUAGAUACAUUUCCCACUUUCUAUC-CGUGUUGCAGCAUCUUCCCGCUCUUCUGGAUCUGCUGCGUGUGCACCUGGUGUGGCUGCAAC ((((((((...((((((((..(((((((((..............))))).-..))))((((((...(((.(.....).)))..)))))))))))).))))))).)))...... ( -32.44, z-score = -1.47, R) >droPer1.super_2 4206107 111 - 9036312 GCUCAUCAAACGGG-ACAUAGAACAAUAGAUACAUUUCCCACUUUCUAUC-CGUGUUGCAGCAUCUUUCCGCUCUUCUGGAUCUGCUGCGUGUGCAUCUGGUGUGGCUGCAAC ((((((((.((((.-..((((((.....((......)).....)))))))-)))...((((((....((((......))))..)))))).........))))).)))...... ( -27.70, z-score = -0.31, R) >droWil1.scaffold_180700 2526841 95 + 6630534 ---------------AUCGACUGAACGAGAUUUACUU-CUG--GUUUAUCUUCUUUAAUAGCAUUUUUCCCAUCUUCUGGCUAUGCUGCAUUUGCACCUGGUGUGGCUGCAAU ---------------...((.(((((.(((......)-)).--))))))).........(((((.....(((.....)))..)))))(((.(..(((...)))..).)))... ( -21.30, z-score = -1.28, R) >droMoj3.scaffold_6496 9153114 109 - 26866924 -CAUAGCUACACUCUGGCCAUACCCUGUAAUUAAUUU-CAU--AAUUUUAUCUUCUAUUAGUGUUUUUCCCAUUUUCUGGAUUUGCUGCAUUUGCACCUGGUGCGGCUGCAAC -..((((..((((..((....................-...--...................((...(((........)))...))(((....))))).))))..)))).... ( -16.70, z-score = 0.78, R) >droVir3.scaffold_12875 13730203 104 - 20611582 ---CAACUCCACUUUGUGUA-GCCAGGCAAUUAAUUUGUAU--AAUUUU-UCUGCU--CAGCGUGUUUCCCAUCUUUUGGAUCUGCUGCAUUUGCACCUGGUGCGGCUGCAAU ---.............((((-(((.((((...((((.....--))))..-..))))--(((((.(..(((........))).)))))).....((((...))))))))))).. ( -24.50, z-score = -0.07, R) >droGri2.scaffold_15245 817880 108 + 18325388 CAGCUGACACACGAGAGUUUCUUAAGAGUUUCUAAUC-UCU--AUUUAUUUUUGCU--CAGCGUUAUCCCCAUCUUUUGGAUAUGCUGCGUUUGCACCUGGUGCGGCUGCAAU ((((((.(((.(((((((......((((........)-)))--....)))))))(.--((((((.((((.........)))))))))).)..........))))))))).... ( -28.20, z-score = -1.35, R) >consensus _____ACCAACUGUCUGGGAUCUCAAUCGAUGCACUUACUA__AUCCAUCUCAUCUUCCAGCAUCUUUCCGCUCUUCUGGAUCUGCUGCGUGUGCACCUGGUGCGGCUGCAAU ..........................................................(((((...(((.........)))..)))))....((((((......)).)))).. (-10.97 = -10.31 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:53 2011