| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,527,732 – 18,527,828 |
| Length | 96 |
| Max. P | 0.668385 |
| Location | 18,527,732 – 18,527,828 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 52.60 |
| Shannon entropy | 0.76890 |
| G+C content | 0.28558 |
| Mean single sequence MFE | -13.98 |
| Consensus MFE | -4.75 |
| Energy contribution | -4.38 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18527732 96 - 21146708 --UUAUCGCAAAUAAGUUGAAAG--CUGGAAAUCCUACCUACC---CAAAUAUUUUCAAUUGAAUUGCAAUUAAAUUCCAAAAUAAGUUUUGGAGUACCCCAA --.....((((...(((((((((--.(((.............)---))....)))))))))...))))......(((((((((....)))))))))....... ( -19.32, z-score = -3.09, R) >droAna3.scaffold_13266 12658001 85 + 19884421 UUUUUAUACAUGUUUAUAGAAGAGCCUGGAAAUACAU---------AAAACAUUUAAAAAUAUACAACUAUUAUUCCGGAAAACCAAAUUCCCG--------- ((((((((......))))))))...((((((......---------...........................))))))...............--------- ( -6.21, z-score = 0.26, R) >droEre2.scaffold_4845 15161010 100 + 22589142 AUUUAUUUCAGAUGGGUUGAAGG--CUGGAAAUUCUUCAUAUCUAACAGGUAAUUUCAAUUGUAUUGAAAUUAAACUAUAAAAUACA-UUUAGAGUACCCCAC ...((((..(((((((((((((.--.(....)..))))).))).......((((((((((...))))))))))............))-)))..))))...... ( -17.60, z-score = -0.59, R) >droSim1.chr2R 17114158 78 - 19596830 AUUUAUAGCAAAGAAGUUGAUAG--CUGGAA-----------------------UUCAGUUGAAUUAAAAUUAAAUUCCAAAACAAAUUUUGGAGUACCCUAA .....((((......)))).(((--(((...-----------------------..))))))............(((((((((....)))))))))....... ( -12.80, z-score = -1.26, R) >consensus AUUUAUUGCAAAUAAGUUGAAAG__CUGGAAAU_CUU_________CAAAUAUUUUCAAUUGAAUUAAAAUUAAACUCCAAAACAAAUUUUGGAGUACCCCAA ..........................................................................((((((((......))))))))....... ( -4.75 = -4.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:53 2011