| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,504,549 – 18,504,668 |
| Length | 119 |
| Max. P | 0.715371 |
| Location | 18,504,549 – 18,504,668 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 95.46 |
| Shannon entropy | 0.07908 |
| G+C content | 0.46555 |
| Mean single sequence MFE | -37.68 |
| Consensus MFE | -33.22 |
| Energy contribution | -33.38 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18504549 119 + 21146708 CACACACUGAUAGGCUUUAUAUGGCUCUUGGACUGGCAUUAUUGCUCAUCCGCCAUGUUGGCUUGCCAGUUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUUGAGCAGUGUGCACCG (((((((((.((((((..(((((((....(((..((((....))))..)))))))))).)))))).))))..........((((.((((((.....))))))..)))).)))))..... ( -41.80, z-score = -3.04, R) >droEre2.scaffold_4845 15137244 119 - 22589142 CACACACAGAUAGGCUUUAUGUGGCACUUUGACUGGCAUUAUUGCUCAUCCGUCAUGUUGGCUUGCCAGCUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUUGAGCAGUGUGCACCG ......(((..(((((......))).))....)))((((.((((((((...((((..((((((((..((((........)))).))))))))....))))...)))))))))))).... ( -36.40, z-score = -1.33, R) >droYak2.chr2R 15967359 119 + 21139217 CACGCACAGAUAGGCUUUAUGUGUCACUUUGAGUGGCAUUAUUGCUCAUCCGCCAUGUUGGCUUGCCAGUUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUCGAGCAGUGUGCACCG ...((((((((..((..((.(((((((.....)))))))))..))..))).(((.....)))..................((((.((((((.....))))))..))))..))))).... ( -35.00, z-score = -1.25, R) >droSec1.super_9 1803186 119 + 3197100 CUCACACAGAUAGGCUUUAUGUGGCUCUUGGACUGGCAUUAUUGCUCAUCCGCCAUGUUGGCUUGACAGUUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUUGAGCAGUGUGCACCG ..(((((....(((((..(((((((....(((..((((....))))..)))))))))).)))))(((......)))....((((.((((((.....))))))..)))).)))))..... ( -37.10, z-score = -1.51, R) >droSim1.chr2R 17089292 119 + 19596830 CUCACACAGAUAGGCUUUAUGUGGCUCUUGGACUGGCAUUAUUGCUCAUCCGCCAUGUUGGCUUGCCAGUUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUUGAGCAGUGUGCACCG ..(((((.....((((..((.((((....(((..((((....))))..)))(((.....)))..))))))..))))....((((.((((((.....))))))..)))).)))))..... ( -38.10, z-score = -1.67, R) >consensus CACACACAGAUAGGCUUUAUGUGGCUCUUGGACUGGCAUUAUUGCUCAUCCGCCAUGUUGGCUUGCCAGUUUAGUCAUUAGUUCCAGGUCAAAUGUUGACUUUUGAGCAGUGUGCACCG ..(((((.(.((((((..(((((((....(((..((((....))))..)))))))))).)))))).).............((((.((((((.....))))))..)))).)))))..... (-33.22 = -33.38 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:52 2011