| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,488,382 – 18,488,472 |
| Length | 90 |
| Max. P | 0.862580 |
| Location | 18,488,382 – 18,488,472 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Shannon entropy | 0.30493 |
| G+C content | 0.32820 |
| Mean single sequence MFE | -15.68 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.90 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18488382 90 + 21146708 UGACUGAAAGCAACAUUUAAAUAUUAAGUCGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUUUUACACUUUUUCGUUAUUUUAC----------- .((((.....................))))(((((..((((((.........))))))...)))))........................----------- ( -15.70, z-score = -1.34, R) >droSim1.chr2R 17073373 90 + 19596830 UGACUGAAAGCAACAUUUAAAUAUUAAGUUGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUUUUACACUUUUUCGUUAUUUUUC----------- ((((.(((((((((.............)))))(((..((((((.........))))))...)))............))))))))......----------- ( -16.42, z-score = -1.42, R) >droSec1.super_9 1787005 90 + 3197100 UGACUGAAAGCAACAUUUAAAUAUUAAGUUGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUUUUACAUUUUUUCGUUAUUUUUC----------- ((((.(((((((((.............)))))(((..((((((.........))))))...)))............))))))))......----------- ( -16.42, z-score = -1.52, R) >droYak2.chr2R 15951023 84 + 21139217 UGACUGAAAGCAACAUUUAAAUAUUAAGUCGCGUGAAGAGUCCAACUUACCAGAAUUCAAGCACGCUUUUACAUAGUUUUUUUC----------------- .((((.....................))))(((((..((((.(.........).))))...)))))..................----------------- ( -11.30, z-score = -0.06, R) >droEre2.scaffold_4845 15120862 81 - 22589142 UGACUGAAAGCAACAUUUAAAUAUUAGGUCGCGUGAAGAGUCCAACUUACCAGAAUUCAAGCACGCUUUUACA---UUUUUUUC----------------- .((((.....................))))(((((..((((.(.........).))))...))))).......---........----------------- ( -10.70, z-score = 0.12, R) >droAna3.scaffold_13266 12614679 78 - 19884421 UGACUGAAAGCAACAUUUAAAUAUUAAGUCGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUAUU------UUUUUUUA----------------- .((((.....................))))(((((..((((((.........))))))...)))))....------........----------------- ( -15.70, z-score = -2.11, R) >droVir3.scaffold_12875 12613152 101 + 20611582 UGACUGAAAGCAACAUUUAAAUAUAAAGUCGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUAUUUUAGAAUGUUAUUGGGUUAUUUAGUUUUUAU .(((((((((((((((((.....((((((.(((((..((((((.........))))))...))))).))))))))))))).....))).)))))))..... ( -23.50, z-score = -2.66, R) >consensus UGACUGAAAGCAACAUUUAAAUAUUAAGUCGCGUGAAGAGUUCAACUUACCAGAAUUCAAGCACGCUUUUACA_UUUUUUGUUA__UU_____________ .((((.....................))))(((((..((((((.........))))))...)))))................................... (-13.94 = -13.90 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:49 2011