| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,476,367 – 18,476,476 |
| Length | 109 |
| Max. P | 0.598185 |
| Location | 18,476,367 – 18,476,476 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.96 |
| Shannon entropy | 0.11305 |
| G+C content | 0.37503 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -20.49 |
| Energy contribution | -21.68 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18476367 109 + 21146708 GGCUCUGACGACAAACGAGCCACGAAAAUUGCAAUUUUAAA-GCAAUUACACAAUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACAU----- (((((...........)))))........((((((......-((((((((.((.(((....))).)))))))))).........((((.....))))....))))))...----- ( -22.90, z-score = -1.55, R) >droAna3.scaffold_13266 12602576 107 - 19884421 AGCUCUGACGACAAACGGGCCACGAAAAUGGCAAUUUUAAAUGCAAUUACA--------AGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACACGUAUA .((((.((..(.......((((......))))....(((..(((((((((.--------((...)).)))))))))..)))...)..))))))...................... ( -22.20, z-score = -0.43, R) >droYak2.chr2R 15940090 108 + 21139217 GGCUCUGACGACAAACGAGCCACGAAAAUGGCAAUUUGAAAUGCAAUUACA--AUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACAU----- (((((...........))))).(((.(((((....(((...(((((((((.--.(((....)))...)))))))))..)))))))).))).(((.........)))....----- ( -24.70, z-score = -1.73, R) >droEre2.scaffold_4845 15110450 108 - 22589142 GGCUCUGACGACAAACGAGCCACGAAAAUGGCAAUUUUAAAUGCAAUUACA--AUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUACCGAGCAUAAAACUGUUGCACAU----- (((((...........))))).......(((.(((.(((..(((((((((.--.(((....)))...)))))))))..)))..))).))).(((.........)))....----- ( -23.80, z-score = -1.64, R) >droSec1.super_9 1774986 108 + 3197100 GGCUCUGACGACAAACGAGCCACGAAAAUGGCAAUUUUAAAUGCAAUUACA--AUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACAU----- (((((...........))))).(((.(((((.....(((..(((((((((.--.(((....)))...)))))))))..)))))))).))).(((.........)))....----- ( -25.70, z-score = -2.31, R) >droSim1.chr2R 17060500 108 + 19596830 GGCUCUGACGACAAACGAGCCACGAAAAUGGCAAUUUUAAAUGCAAUUACA--AUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACAU----- (((((...........))))).(((.(((((.....(((..(((((((((.--.(((....)))...)))))))))..)))))))).))).(((.........)))....----- ( -25.70, z-score = -2.31, R) >consensus GGCUCUGACGACAAACGAGCCACGAAAAUGGCAAUUUUAAAUGCAAUUACA__AUUACAAGUAGCUGGUAAUUGCAAGUAACUAUUAUCGAGCAUAAAACUGUUGCACAU_____ (((((...........))))).(((.(((((.....(((..(((((((((....(((....)))...)))))))))..)))))))).))).(((.........)))......... (-20.49 = -21.68 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:44 2011