| Sequence ID | dm3.chr2L |
|---|---|
| Location | 430,709 – 430,817 |
| Length | 108 |
| Max. P | 0.925445 |
| Location | 430,709 – 430,817 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.15 |
| Shannon entropy | 0.30445 |
| G+C content | 0.34289 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -17.22 |
| Energy contribution | -16.54 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 430709 108 - 23011544 ---------GCUAUCUUGUAGUUUACAUUGUAUAUUACAAUUAC---AUUAUGAGUUCUAUCUUUUGGCAUUCACUUUUUGCCAAACUAUGGCGGAAGCCUAUUGGAUUCAAAUCUAGCU ---------((((..(((((((.(((...))).)))))))....---....(((((((.....(((((((.........)))))))....(((....)))....)))))))....)))). ( -30.20, z-score = -4.39, R) >droEre2.scaffold_4929 482865 113 - 26641161 -------UCGCUAUCUUGCAGUUUAUUUACUAUCUUAUUCUAACAUUAUUAUUAGUUUUAUCUUUCGGCAUUCACUUUUUGCGAAAUUGUGGCGGUAGCCUGUUAGAUUCAAAUCUAGCU -------..(((((((..((((((...............((((........))))............(((.........))).))))))..).))))))..(((((((....))))))). ( -22.20, z-score = -1.87, R) >droYak2.chr2L 415365 120 - 22324452 UCCUACACAGAUAUCUUGUAGUUUACUUGCAAUCUUAUUCUAACAUUAUUAUUAGAUCUAUCUUUCGGCAUUCACUUUUUGCUAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCCAGCU .................(((((((..............(((((........)))))..........((((.........)))))))))))(((....))).(((((((....))))))). ( -24.70, z-score = -2.10, R) >droSec1.super_14 414584 108 - 2068291 ---------GCUGUCUUGUAGUUUAUUUACUAUCUUAUUCCUAC---AUUAUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUAGAUUCGAAUCUAGCU ---------........(((((((....((((............---.....))))...........(((.........))).)))))))(((....))).(((((((....))))))). ( -19.83, z-score = -0.95, R) >droSim1.chr2L 437188 108 - 22036055 ---------GCUGUCCUGUAGUUUAUUUACUAUCUUAUUCCUAC---AUUAUAAGGUUUAUCAUUUGGCAUUCACCUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCU ---------........(((((((.......(((((((......---...)))))))..........(((.........))).)))))))(((....))).(((((((....))))))). ( -22.60, z-score = -1.20, R) >consensus _________GCUAUCUUGUAGUUUAUUUACUAUCUUAUUCUUAC___AUUAUUAGUUCUAUCUUUUGGCAUUCACUUUUUGCAAAACUAUGGCGGAAGCCUGUUGGAUUCAAAUCUAGCU .................(((((((..............................(......).....(((.........))).)))))))(((....))).(((((((....))))))). (-17.22 = -16.54 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:44 2011