| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,465,171 – 18,465,271 |
| Length | 100 |
| Max. P | 0.877030 |
| Location | 18,465,171 – 18,465,271 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.43 |
| Shannon entropy | 0.28210 |
| G+C content | 0.38414 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.37 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18465171 100 + 21146708 AAUUAAGUCGUAGAGUGACCAAACUCUCUAUUAAGCGCCUGUAUAACCUUAUGCUCGCAAGUAGAAACGCUUUGUAUUUCAAUUUGG--CCACUCUAGUUUA------ ..........(((((((.(((((.....(((.((((((..(((((....)))))..))..((....)))))).)))......)))))--.))))))).....------ ( -24.20, z-score = -2.44, R) >droSec1.super_9 1770004 108 + 3197100 AAUUAAGUCGUAGAGUGACCGAACUCUGUAUUAAGCGUUAGUGUAACCUUAUGCUCGCAAGUAGACACGCUUUAUAUUUCGCUUUAUAUUUAUAUUGGCCUCUCUAGU ..........(((((.(.((((.....((((.(((((..(((((((.......(((....).)).......))))))).))))).)))).....)))).).))))).. ( -24.34, z-score = -1.06, R) >droSim1.chr2R 17055433 97 + 19596830 AAUUAAGUUGUAGAGUGACCGAACUCUGUAUUAAGCGUGAGUGUAACCUUAUGCUCGCAAGUAGACACGCUUUAUAUUUCAAUUUGG--CCACUCUGGU--------- ..........(((((((.(((((....((((.(((((((((((((....)))))))))..((....)))))).)))).....)))))--.)))))))..--------- ( -29.90, z-score = -3.17, R) >consensus AAUUAAGUCGUAGAGUGACCGAACUCUGUAUUAAGCGUCAGUGUAACCUUAUGCUCGCAAGUAGACACGCUUUAUAUUUCAAUUUGG__CCACUCUGGU_U_______ ..........(((((((.(((((....((((.((((((.((((((....)))))).))..((....)))))).)))).....)))))...)))))))........... (-17.46 = -17.37 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:42 2011