| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,462,830 – 18,462,894 |
| Length | 64 |
| Max. P | 0.513125 |
| Location | 18,462,830 – 18,462,894 |
|---|---|
| Length | 64 |
| Sequences | 8 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Shannon entropy | 0.50965 |
| G+C content | 0.44824 |
| Mean single sequence MFE | -12.60 |
| Consensus MFE | -6.80 |
| Energy contribution | -6.93 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18462830 64 + 21146708 CUGCCUUCCAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCCCACUC- ..((((.(((....((((((....))))))(((........))).)))....))))........- ( -14.80, z-score = -1.48, R) >droAna3.scaffold_13266 12596055 64 - 19884421 AUCCUUUCUAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCCCCACCAU- ..............((((((....))))))(((........)))..(((.....))).......- ( -10.80, z-score = -0.44, R) >droEre2.scaffold_4845 15103146 63 - 22589142 -UUCCUUCCAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCACUCCC- -.............((((((....))))))........(((.(((((....)))))))).....- ( -12.60, z-score = -1.27, R) >droYak2.chr2R 15932371 53 + 21139217 ------------CAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCCCCCGUC ------------..((((((....)))))).........((.(((((....)))))))....... ( -11.00, z-score = -0.74, R) >droSec1.super_9 1767686 64 + 3197100 CUGCCUUCCAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCCCUCUC- ..((((.(((....((((((....))))))(((........))).)))....))))........- ( -14.80, z-score = -1.57, R) >droSim1.chr2R 17053127 64 + 19596830 CUGCCUUCCAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCCCUCUC- ..((((.(((....((((((....))))))(((........))).)))....))))........- ( -14.80, z-score = -1.57, R) >droVir3.scaffold_12875 12589990 50 + 20611582 CUGCAGGCCAUUCAAAUGACUU-GGUCAUCGCAGUUAAUGAUGCCUGAACG-------------- ...(((((...(((..((((((-(.....)).))))).))).)))))....-------------- ( -11.20, z-score = -0.62, R) >droGri2.scaffold_15245 10549507 50 - 18325388 CUGUUGGCCAUUCAAAUGACUU-GGUCAUUGCAGUUAAUGAUGCCUGAACG-------------- ((((((((((.((....))..)-)))))..)))).................-------------- ( -10.80, z-score = -0.79, R) >consensus CUGCCUUCCAUUCAAAUGACUUUAGUCAUUGCAGUUAAUGAUGCCUGGCUUUAGGCUCCCUCUC_ ..............((((((....))))))(((........)))..................... ( -6.80 = -6.93 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:41 2011