| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,414,489 – 18,414,599 |
| Length | 110 |
| Max. P | 0.947140 |
| Location | 18,414,489 – 18,414,599 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 50.75 |
| Shannon entropy | 0.71533 |
| G+C content | 0.40660 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -7.33 |
| Energy contribution | -6.47 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.72 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18414489 110 - 21146708 GCUCUGGAAGCUAUGGAAAAC--AAGGAGUAUGCAGUAGGUGCCUUUCUUGAUAUUCAACAGGCUUUUGACAGAGUCUGGCACCCUGGGCUCCUGUACAAAGCGAAGAGGCU .((((....(((.((....((--(.(((((...(((..((((((....(((.....))).((((((......))))))))))))))).)))))))).)).)))..))))... ( -37.30, z-score = -1.22, R) >anoGam1.chr3R 12670294 112 + 53272125 AUUUUGAACGGAAUAAGAGGGUGAGCAAGUCCACCAUGGUCGCAAUGUUGGAUGUUGAAAAGGCAUUUGACAAUGUUUGGCAUGAUGGACUUGUUCAUAAACUUGUCACCUU .........((.(((((...(((((((((((((.((((.(.(((.(((..((((((.....))))))..))).)))..).)))).)))))))))))))...)))))..)).. ( -44.10, z-score = -5.19, R) >triCas2.singleUn_1324 1975 110 + 6015 -AUUUCCACCUCAUAUACAAAU-AACAAAAUUUCCACUCUCAUAUCUCUUGACAUCGAAAAAGCCUUUGAUACCGUUUGGCAUCAAGGCCUUAUUAUCAAACUAUUAAAAUU -..................(((-((.....((((.....(((.......)))....))))..(((((.(((.((....)).)))))))).)))))................. ( -11.30, z-score = -1.25, R) >consensus _AUUUGAACGCAAUAAAAAAAU_AACAAGUAUACCAUAGUCGCAUUUCUUGAUAUUGAAAAGGCAUUUGACAAAGUUUGGCAUCAUGGACUUAUUAACAAACUAAUAAAAUU ........................((((((((((((............)))...........(((...(((...))).)))....))))))))).................. ( -7.33 = -6.47 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:34 2011