| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,412,609 – 18,412,705 |
| Length | 96 |
| Max. P | 0.841445 |
| Location | 18,412,609 – 18,412,705 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.16 |
| Shannon entropy | 0.21013 |
| G+C content | 0.34103 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -17.83 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.841445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18412609 96 - 21146708 ---------------------CUUUGUGUGUGUGUGUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUCAAUUC ---------------------....((((.(((.(((..((((((.(((((....))))).)))))).)))...)))(((......))).))))((((((...--...))))))..... ( -28.00, z-score = -3.34, R) >droSim1.chr2R 17005405 98 - 19596830 -------------------CUUUGUGUGUGUGUGUGAGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUCAAUUC -------------------....((((.(((.(((....((((((.(((((....))))).)))))).)))...)))(((......))).))))((((((...--...))))))..... ( -26.90, z-score = -2.62, R) >droSec1.super_9 1720924 98 - 3197100 -------------------CUUUGUGUGUGUGUGUGAGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUCAAUUC -------------------....((((.(((.(((....((((((.(((((....))))).)))))).)))...)))(((......))).))))((((((...--...))))))..... ( -26.90, z-score = -2.62, R) >droYak2.chr2R 15883402 98 - 21139217 -------------------CUUUGUGUGUGUGUGUGUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUCAAUUC -------------------....((((.(((...(((..((((((.(((((....))))).)))))).)))...)))(((......))).))))((((((...--...))))))..... ( -28.70, z-score = -3.25, R) >droEre2.scaffold_4845 15055838 98 + 22589142 -------------------CUUUGUGUGUGUGUGUGUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUCAAUUC -------------------....((((.(((...(((..((((((.(((((....))))).)))))).)))...)))(((......))).))))((((((...--...))))))..... ( -28.70, z-score = -3.25, R) >droAna3.scaffold_13266 12549747 117 + 19884421 UUCUCUCUCUCUGCUCGGCUCUUUUGUGUGUGUGUGUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU--UAUGCUUUGAAUUC .......((...((......(((((((((.(((.(((..((((((.(((((....))))).)))))).)))...)))(((......))).)))))))))....--...))...)).... ( -27.62, z-score = -1.58, R) >droPer1.super_2 7227332 97 - 9036312 ----------------------UCUCCUUCUGAGUCUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUUUAUAUGCUUUGAGUUC ----------------------.(((.......(((...((((((.(((((....))))).))))))..........(((......))))))...(((((........))))))))... ( -20.10, z-score = -1.21, R) >dp4.chr3 7027080 97 - 19779522 ----------------------UCUCCUUCUGAGUCUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUUUAUAUGCUUUGAGUUC ----------------------.(((.......(((...((((((.(((((....))))).))))))..........(((......))))))...(((((........))))))))... ( -20.10, z-score = -1.21, R) >consensus ___________________CUUUGUGUGUGUGUGUGUGAAAUUGAAUGCUCAAUUGAGCACUUAAUUAGCAAAAACAGUUUUUAAUGACGACACGAAAGCUUU__UAUGCUUUCAAUUC ..............................(((((....((((((.(((((....))))).))))))..........(((......))).)))))(((((........)))))...... (-17.83 = -18.07 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:33 2011