| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,665,181 – 3,665,275 |
| Length | 94 |
| Max. P | 0.612010 |
| Location | 3,665,181 – 3,665,275 |
|---|---|
| Length | 94 |
| Sequences | 9 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 84.28 |
| Shannon entropy | 0.32088 |
| G+C content | 0.46185 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -15.33 |
| Energy contribution | -16.19 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3665181 94 + 23011544 ----CCCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAGAGCAGCAAAAA-------- ----..(((.((((.(((....)))..((((.....))))........(((((.....(((.....)))..))))).........)))))))......-------- ( -22.60, z-score = -1.81, R) >droSim1.chr2L 3619879 93 + 22036055 ----CCCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAA--------- ----..(((.(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..))))).............))).....--------- ( -20.50, z-score = -1.32, R) >droSec1.super_5 1760810 93 + 5866729 ----CCCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAA--------- ----..(((.(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..))))).............))).....--------- ( -20.50, z-score = -1.32, R) >droYak2.chr2L 3658159 102 + 22324452 ----CGCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAAAUGUGGAAA ----.((((.(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..))))).............))))............. ( -25.20, z-score = -1.10, R) >droEre2.scaffold_4929 3699385 92 + 26641161 ----CUCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAA-CAAAAGCAGCAAAA--------- ----..(((.(((..(((....)))..((((.....))))....))).(((((.....(((.....)))..)))))......-......))).....--------- ( -20.30, z-score = -0.92, R) >droAna3.scaffold_12916 5718950 82 + 16180835 ----GCCUGACUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUCCGCUUAAUGCGCCCCGAGACAAAAAAAA-------------------- ----...((.(((..((((((((....((((...........))))..)))))......((.....)))))..))).)).......-------------------- ( -18.20, z-score = -2.29, R) >dp4.chr4_group3 6626755 97 - 11692001 CUGGGUCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAAA--------- (((((((.((((...(((....))))))))))................(((((.....(((.....)))..)))))............)))).....--------- ( -24.60, z-score = -1.83, R) >droPer1.super_1 3726071 96 - 10282868 CUGGGUCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAACCAGCAAA---------- (((((((.((((...(((....))))))))))................(((((.....(((.....)))..)))))............))))....---------- ( -24.60, z-score = -1.75, R) >droMoj3.scaffold_6500 14311257 78 - 32352404 ----CUUUGAGCCUAGGCGCGAGCCAAUUGACACAAUC---------------AAAUGCGCUUAAUGCAGC-UGAAACAAAAACAAAAACAACAAGCG-------- ----..((((((...(((....)))..((((.....))---------------))....))))))....((-(.....................))).-------- ( -15.20, z-score = -0.75, R) >consensus ____CCCUGAUUCUAGGCGCGAGCCAAUUGACACAAUCAAAUUCGAACCUCGCAAAUUCGCUUAAUGCGCCGCGAGACAAAAACAAAAGCAGCAAAA_________ ......(((......(((....))).......................(((((.....(((.....)))..))))).............))).............. (-15.33 = -16.19 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:22 2011